wrong order with if not

labsyspharm · Apr 10, 2020 · bd53e8d · bd53e8d
1 parent b7389d8
commit bd53e8d
Showing 1 changed file with 6 additions and 4 deletions.
diff --git a/SingleCellDataExtraction.py b/SingleCellDataExtraction.py
@@ -170,15 +170,17 @@ def ExtractSingleCells(mask,image,channel_names,output):
     sniffer.has_header(open(channel_names).readline())
     #If header not available
     if not sniffer:
+        #If header available
+        channel_names_loaded = pd.read_csv(channel_names)
+        channel_names_loaded_list = list(channel_names_loaded.marker_name)
+    else:
+        print("negative")
         #old one column version
         channel_names_loaded = pd.read_csv(channel_names,header=None)
         #Add a column index for ease
         channel_names_loaded.columns = ["marker"]
         channel_names_loaded = list(channel_names_loaded.marker.values)
-    else:
-    #If header available
-        channel_names_loaded = pd.read_csv(channel_names)
-        channel_names_loaded_list = list(channel_names_loaded.marker_name)
+
 
 
     #Check for unique marker names -- create new list to store new names