v0.11.1

[0.11.1]

Added

• Support for additional fragment ion types, via the "database.ion_kinds" configuration option. Valid values are "a", "b", "c", "x", "y", "z"

    "database": {
      "enzyme": {
        "missed_cleavages": 1,
        "min_len": 8,
        "max_len": 30,
        "cleave_at": "KR",
        "restrict": "P"
      },
      "ion_kinds": ["b", "y", "c", "z"],
      "static_mods": {
        "C": 57.0214
      },
      "variable_mods": {
        "M": 15.9949,
        "S": 541.0611
      },
    },

Changed

• Sort protein names alphanumerically for each peptide entry. This should enhance stability across runs, and fixes a bug with picked-protein group FDR
• Fix another bug where picked-FDR approaches assume internal decoy generation

Full Changelog: v0.11.0...v0.11.1