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single-cell-best-practices Public
Forked from theislab/single-cell-best-practiceshttps://www.sc-best-practices.org
Jupyter Notebook Other UpdatedOct 16, 2023 -
decoupler-py Public
Forked from saezlab/decoupler-pyPython package to infer biological activities from omics data using a collection of methods.
Python GNU General Public License v3.0 UpdatedOct 5, 2023 -
Online_R_learning Public
Forked from cxli233/Online_R_learningOnline R learning for applied statistics
Creative Commons Zero v1.0 Universal UpdatedOct 1, 2023 -
applied-bioinformatics-iab2 Public
Forked from applied-bioinformatics/iab2An Introduction to Applied Bioinformatics, 2nd Edition
TeX UpdatedMay 14, 2023 -
napari-chatgpt Public
Forked from royerlab/napari-chatgptA napari plugin to process and analyse images with chatGPT!
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 3, 2023 -
spatial-transcriptomics-pipeline Public
Forked from hubmapconsortium/spatial-transcriptomics-pipelinePython GNU General Public License v3.0 UpdatedFeb 15, 2023 -
BiaPy Public
Forked from BiaPyX/BiaPyOpen source Python library for building bioimage analysis pipelines
Jupyter Notebook MIT License UpdatedFeb 13, 2023 -
Mask_RCNN Public
Forked from matterport/Mask_RCNNMask R-CNN for object detection and instance segmentation on Keras and TensorFlow
Python Other UpdatedDec 28, 2022 -
single-cell-tutorial Public
Forked from theislab/single-cell-tutorialSingle cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Jupyter Notebook UpdatedDec 11, 2022 -
useqfish_analysis Public
Forked from GradinaruLab/useqfish_analysisJupyter Notebook GNU General Public License v3.0 UpdatedDec 3, 2022 -
sitk-ibex Public
Forked from niaid/sitk-ibexAligning images acquired with the IBEX microscopy imaging technique
Python Apache License 2.0 UpdatedDec 1, 2022 -
RNAlysis Public
Forked from GuyTeichman/RNAlysisRNA sequencing analysis software
Python MIT License UpdatedNov 25, 2022 -
useqfish_probedesign Public
Forked from GradinaruLab/useqfish_probedesignPython UpdatedNov 23, 2022 -
RS-FISH Public
Forked from PreibischLab/RS-FISHTool for precise, interactive, fast and scalable FISH spot detection
Java UpdatedNov 21, 2022 -
python_biologist Public
Forked from niaid/python_biologistPython Programming for Biologists
OpenEdge ABL UpdatedSep 29, 2022 -
Data-Science-For-Beginners Public
Forked from microsoft/Data-Science-For-Beginners10 Weeks, 20 Lessons, Data Science for All!
Jupyter Notebook MIT License UpdatedSep 28, 2022 -
xDbit_toolbox Public
Forked from jwrth/xDBiT_toolboxAnalysis pipeline for multiplexed Deterministic Barcoding in Tissue (xDbit)
Jupyter Notebook MIT License UpdatedSep 1, 2022 -
spark Public
Forked from apache/sparkApache Spark - A unified analytics engine for large-scale data processing
Scala Apache License 2.0 UpdatedJul 22, 2022 -
Patch-GCN Public
Forked from mahmoodlab/Patch-GCNContext-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
Python GNU General Public License v3.0 UpdatedJun 26, 2022 -
python-bioimage-analysis-tutorial Public
Forked from WhoIsJack/python-bioimage-analysis-tutorialThe new and improved 2018 version of the EMBL Python BioImage Analysis Tutorial. Now finally in python 3!
Jupyter Notebook MIT License UpdatedMay 19, 2022 -
fq-segmentation Public
Forked from fish-quant/fq-segmentationWrapper code for segmentation of cells and nuclei with Cellpose.
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 5, 2022 -
scRNAseq_analysis_vignette Public
Forked from quadbio/scRNAseq_analysis_vignetteTutorial for scRNA-seq data analysis beginners using R
UpdatedMay 4, 2022 -
ML-YouTube-Courses Public
Forked from dair-ai/ML-YouTube-Courses📺 A place to discover the latest machine learning courses on YouTube.
Creative Commons Zero v1.0 Universal UpdatedApr 17, 2022 -
stereopy Public
Forked from STOmics/StereopyA toolkit of spatial transcriptomic analysis.
Jupyter Notebook MIT License UpdatedApr 1, 2022 -
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scientific-visualization-book Public
Forked from rougier/scientific-visualization-bookAn open access book on scientific visualization using python and matplotlib
Python Other UpdatedFeb 28, 2022 -
scikit-learn Public
Forked from scikit-learn/scikit-learnscikit-learn: machine learning in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 26, 2022 -
cellpose Public
Forked from MouseLand/cellposea generalist algorithm for cellular segmentation
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJan 25, 2022 -
APT Public
Forked from kristinbranson/APTAnimal Part Tracker
Jupyter Notebook GNU General Public License v3.0 UpdatedJan 21, 2022 -
qupath-extension-cellpose Public
Forked from BIOP/qupath-extension-cellposean extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
Java Apache License 2.0 UpdatedJan 21, 2022