Install Polychrome to resolve https://github.com/lcolladotor/cshl_rst…

…ats_genome_scale_2023/actions/runs/5478274024/jobs/9978524808#step:23:267
lcolladotor · Jul 6, 2023 · 2baafdb · 2baafdb
1 parent decf332
commit 2baafdb
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Showing 3 changed files with 8 additions and 3 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -40,6 +40,7 @@ Imports:
     limma,
     lobstr,
     patchwork,
+    Polychrome,
     pheatmap,
     postcards,
     RColorBrewer,

diff --git a/index.R b/index.R
@@ -1,4 +1,4 @@
-## ----install, eval = FALSE-----------------------------------
+## ----install, eval = FALSE-------------------------------------------------------------------------
 ## ## For installing Bioconductor packages
 ## if (!requireNamespace("BiocManager", quietly = TRUE)) {
 ##     install.packages("BiocManager")
@@ -33,6 +33,7 @@
 ##         "RColorBrewer",
 ##         "ComplexHeatmap",
 ##         "cowplot",
+##         "Polychrome",
 ##         "spatialLIBD", ## Advanced
 ##         "variancePartition"
 ##     )
@@ -46,7 +47,7 @@
 ## BiocManager::install("lcolladotor/biocthis")
 
 
-## ----session_packages, eval = TRUE, message = FALSE----------
+## ----session_packages, eval = TRUE, message = FALSE------------------------------------------------
 ## Load the package at the top of your script
 library("sessioninfo")
 
@@ -90,12 +91,13 @@ library("stringr")
 library("cowplot")
 library("rlang")
 library("ggrepel")
+library("Polychrome")
 
 ## Spatial transcriptomics
 library("spatialLIBD")
 
 
-## ----session_info--------------------------------------------
+## ----session_info----------------------------------------------------------------------------------
 ## Reproducibility information
 options(width = 120)
 session_info()

diff --git a/index.Rmd b/index.Rmd
@@ -115,6 +115,7 @@ BiocManager::install(
         "RColorBrewer",
         "ComplexHeatmap",
         "cowplot",
+        "Polychrome",
         "spatialLIBD", ## Advanced
         "variancePartition"
     )
@@ -178,6 +179,7 @@ library("stringr")
 library("cowplot")
 library("rlang")
 library("ggrepel")
+library("Polychrome")
 
 ## Spatial transcriptomics
 library("spatialLIBD")