Skip to content

Commit

Permalink
Browse files Browse the repository at this point in the history
  • Loading branch information
lcolladotor committed Jul 3, 2023
1 parent 75e6fa1 commit 62a703f
Showing 1 changed file with 2 additions and 0 deletions.
2 changes: 2 additions & 0 deletions 01_SPEAQeasy.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -73,6 +73,8 @@ Either by exploring the object `rse_gene` or by checking the `SPEAQeasy` documen
Across genes (`rse_gene`), exons (`rse_exon`), exon-exon junctions (`rse_jx`), and transcripts (`rse_tx`), what part of the output is identical?
</p>

If you want to answer this question with data, you could use the 4 `RSE` objects from the BrainSEQ Phase II study that are available at http://eqtl.brainseq.org/phase2/. They were created with the scripts at https://github.com/LieberInstitute/brainseq_phase2#rse_gene_unfilteredrdata. Note that these are much larger objects since they contain information for 900 samples.

## Solutions

<style>
Expand Down

0 comments on commit 62a703f

Please sign in to comment.