Merge pull request #148 from taylordeatri/feature/PHD-898-add-json-qu…

…ery-to-lo-cli-fhir-sql

add json query to lo cli fhir sql

lib/cmds/fhir_cmds/sql.js

@@ -2,13 +2,15 @@
 
 const { post } = require('../../api');
 const print = require('../../print');
+const read = require('../../read');
 
 exports.command = 'sql <statement>';
 exports.desc = 'Use SQL to query FHIR resources';
 exports.builder = yargs => {
   yargs.positional('statement', {
     describe: 'The SQL statement.',
-    type: 'string'
+    type: 'string',
+    required: false
   }).option('project', {
     describe: 'The project identifier',
     type: 'string'
@@ -17,9 +19,18 @@ exports.builder = yargs => {
 
 exports.handler = async argv => {
   const project = argv.project;
-  const statement = argv.statement;
+  let statement = '';
+  let contentType = 'text/plain';
+
+  if (argv.statement && argv.statement !== '') {
+    statement = argv.statement;
+  } else {
+    statement = await read(argv);
+    contentType = 'application/json';
+  }
+
   const url = `/v1/fhir-search/projects/${project}/`;
-  const options = { ...argv, ContentType: 'text/plain' };
+  const options = { ...argv, ContentType: contentType };
   const response = await post(options, url, statement);
   const data =
     response.data.hits.hits

lib/cmds/genomics_cmds/get-test.js

@@ -0,0 +1,21 @@
+'use strict';
+
+const { get } = require('../../api');
+const print = require('../../print');
+
+exports.command = 'get-test <projectId> <testId>';
+exports.desc = 'Fetch test details by <projectId> and <testId>.';
+exports.builder = yargs => {
+  yargs.positional('projectId', {
+    describe: 'The project ID.',
+    type: 'string'
+  }).positional('testId', {
+    describe: 'The test ID.',
+    type: 'string'
+  });
+};
+
+exports.handler = async argv => {
+  const response = await get(argv, `/v1/genomics/projects/${argv.projectId}/tests/${argv.testId}`);
+  print(response.data, argv);
+};