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50 Open 190 Closed
50 Open 190 Closed
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Issues list

Use gradle default dependency management and create shadow/fat jar by using existing tools
#253 opened Sep 18, 2024 by circlesmiler
2
jvarkit docker container memory error
#251 opened Jul 26, 2024 by molly-hetheringtonrauth
3
[minicaller] alt alle frequency calculation
#249 opened May 29, 2024 by tingchenlrx
request for Biostar398854 - Not called SNPs in lowercase letter in output FASTA
#246 opened Apr 19, 2024 by Zwiep2023
Class file version mismatch error while running Jvarkit
#244 opened Mar 1, 2024 by indianAppl
1
Task :vcf2bam FAILED
#239 opened Sep 17, 2023 by liyaron
16
[INFO][Launcher]biostar139647 Exited with failure (-1)
#237 opened Jul 6, 2023 by tbazilegith
1
JAVA_HOME not defined but it is
#236 opened Jun 23, 2023 by ghost
1
No read groups in bam
#234 opened Apr 26, 2023 by zoeward-nz
1
Bug in msa2vcf ?
#232 opened Mar 31, 2023 by wwood
4
Backlocate w/ E. coli genome
#225 opened Dec 20, 2022 by ibrahimkurt
3
vcf2svg
#222 opened Nov 18, 2022 by Shingzzz
Task 'MapUniProtFeatures.main()' not found in root project 'jvarkit'.
#218 opened Nov 9, 2022 by wunalahu2
2
Test AssertionError
#213 opened Oct 7, 2022 by jamdodot
2
Randomized runs of Biostar154220.html
#212 opened Oct 3, 2022 by tuannguyen8390
1
Request to add a 'plot largest n contigs' for WGSCoveragePlotter
#207 opened Aug 31, 2022 by DeadlineWasYesterday
1
Does jvarkit provide official test cases?
#206 opened Aug 22, 2022 by YFLEEL
6
specify list of scaffolds for wgsCoveragePlotter
#202 opened Jun 17, 2022 by PAMorin
2
installation issue
#201 opened Jun 10, 2022 by newatil
1
Adding INFO data in bioalcidaejdk.jar result
#196 opened Dec 22, 2021 by se2cheeese
1
set seed for biostar145820.jar
#189 opened Oct 5, 2021 by sklasfeld
1
tview / ttview equivalent for protein-peptides bam
#188 opened Sep 29, 2021 by avilella
1
Same version of java also fails
#186 opened Sep 3, 2021 by Alqueno
1
findallcoverageatposition output incorrect numbers
#180 opened Mar 3, 2021 by yliueagle
5
Actual AF vs target AF in Introducing artificial mutation SNV in bam (biostar404363)
#175 opened Feb 6, 2021 by ericaenjoy3
ProTip! Updated in the last three days: updated:>2024-11-11.