This repository contains source files for the "Orchestrating Spatial (Transcript)omics Analysis with Bioconductor" book.
The development version of the book is available at: https://lmweber.org/OSTA/
The online version of the book is built by the GitHub Actions workflows in .github/workflows/ after merging into the devel branch.
Please send pull requests into sandbox branch (instead of devel).
To build a local rendered version of the book (e.g. for checking), run the following in the inst/ directory:
quarto::quarto_render(cache = TRUE, output_format = "html")
In each analysis / method chapter, we aim to include the following:
- brief background and overview
- mention any relevant benchmark papers
- demonstrate 1-2 key methods available in Bioconductor using code examples
- (optional) mention any other important methods in text (but keep concise)
Workflow chapters are longer and are intended to demonstrate a comprehensive workflow for a given data type / technological platform.
Please keep any added file sizes (e.g. images) as small as possible, and/or commit only code files.
