Code

Feat/macs3/python style cython (1st)#664

Code

Merged

taoliu merged 11 commits intomastermacs3-project/MACS:masterfrom feat/macs3/python_style_cythonmacs3-project/MACS:feat/macs3/python_style_cythonCopy head branch name to clipboardOct 8, 2024

+4,218-3,843

Commits

Commits on Oct 4, 2024

• rewrite pyx in pure python style for compatibility

  taoliu

  committed
  a6e81bc

  Copy full SHA for a6e81bc

• rewrite region.py

  taoliu

  committed
  05b6b75

  Copy full SHA for 05b6b75

• rewrite pileup.py

  taoliu

  committed
  e8a2404

  Copy full SHA for e8a2404

• fix bug -- pass int instead of float

  taoliu

  committed
  b1775f8

  Copy full SHA for b1775f8

Commits on Oct 5, 2024

• rewrite pileupv2.py

  taoliu

  committed
  490380f

  Copy full SHA for 490380f

Commits on Oct 7, 2024

• rewrite Parser.py. Fix issues in big-endian system.

  taoliu

  committed
  c1093cb

  Copy full SHA for c1093cb

• rewrite BAM.py. Support big-endian in BAM.py/callvar now

  taoliu

  committed
  43140cb

  Copy full SHA for 43140cb

• describe the filtering criteria in SAM/BAM/BAMPE parser

  taoliu

  committed
  7bbcfa8

  Copy full SHA for 7bbcfa8

• rewrite BAM.py. Support big-endian in BAM.py/callvar now

  taoliu

  committed
  49d2302

  Copy full SHA for 49d2302

Commits on Oct 8, 2024

• rewrite BedGraphIO.py

  taoliu

  committed
  954774f

  Copy full SHA for 954774f

• update changelog. prepare temp push

  taoliu

  committed
  263dcc6

  Copy full SHA for 263dcc6