Vector CNV pipeline version 1.0.0 #285
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| # This workflow validates all pipeline WDL files (those found in the pipelines/ directory) using the 'miniwdl' tool. | |
| name: ValidateWdl | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| validate_wdl_job: | |
| runs-on: ubuntu-latest | |
| name: Validate all wdl using miniwdl | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| repository: malariagen/pipelines | |
| - name: Set up Python 3.7 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.7 | |
| - name: Install mini-wdl | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip3 install miniwdl | |
| - name: Run miniwdl | |
| run: | | |
| ./scripts/validate_wdls.sh |