Add mvesuvio folder to source

mantidproject · Jul 2, 2024 · 02ff6fb · 02ff6fb
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diff --git a/mvesuvio/__init__.py → src/mvesuvio/__init__.py b/mvesuvio/__init__.py → src/mvesuvio/__init__.py
diff --git a/mvesuvio/_version.py → src/mvesuvio/_version.py b/mvesuvio/_version.py → src/mvesuvio/_version.py
diff --git a/mvesuvio/analysis_runner.py → src/mvesuvio/analysis_runner.py b/mvesuvio/analysis_runner.py → src/mvesuvio/analysis_runner.py
diff --git a/mvesuvio/config/Mantid.user.properties → src/mvesuvio/config/Mantid.user.properties b/mvesuvio/config/Mantid.user.properties → src/mvesuvio/config/Mantid.user.properties
diff --git a/mvesuvio/config/__init__.py → src/mvesuvio/config/__init__.py b/mvesuvio/config/__init__.py → src/mvesuvio/config/__init__.py
diff --git a/mvesuvio/config/analysis_inputs.py → src/mvesuvio/config/analysis_inputs.py b/mvesuvio/config/analysis_inputs.py → src/mvesuvio/config/analysis_inputs.py
diff --git a/mvesuvio/config/ip_files/__init__.py → src/mvesuvio/config/ip_files/__init__.py b/mvesuvio/config/ip_files/__init__.py → src/mvesuvio/config/ip_files/__init__.py
diff --git a/mvesuvio/config/ip_files/ip2018.par → src/mvesuvio/config/ip_files/ip2018.par b/mvesuvio/config/ip_files/ip2018.par → src/mvesuvio/config/ip_files/ip2018.par
diff --git a/mvesuvio/config/ip_files/ip2018_2.par → src/mvesuvio/config/ip_files/ip2018_2.par b/mvesuvio/config/ip_files/ip2018_2.par → src/mvesuvio/config/ip_files/ip2018_2.par
diff --git a/mvesuvio/config/ip_files/ip2018_3.par → src/mvesuvio/config/ip_files/ip2018_3.par b/mvesuvio/config/ip_files/ip2018_3.par → src/mvesuvio/config/ip_files/ip2018_3.par
diff --git a/mvesuvio/config/ip_files/ip2019.par → src/mvesuvio/config/ip_files/ip2019.par b/mvesuvio/config/ip_files/ip2019.par → src/mvesuvio/config/ip_files/ip2019.par
diff --git a/mvesuvio/config/vesuvio.user.properties → src/mvesuvio/config/vesuvio.user.properties b/mvesuvio/config/vesuvio.user.properties → src/mvesuvio/config/vesuvio.user.properties
diff --git a/mvesuvio/scripts/__init__.py → src/mvesuvio/scripts/__init__.py b/mvesuvio/scripts/__init__.py → src/mvesuvio/scripts/__init__.py
diff --git a/mvesuvio/scripts/handle_config.py → src/mvesuvio/scripts/handle_config.py b/mvesuvio/scripts/handle_config.py → src/mvesuvio/scripts/handle_config.py
diff --git a/mvesuvio/system_tests/__init__.py → src/mvesuvio/system_tests/__init__.py b/mvesuvio/system_tests/__init__.py → src/mvesuvio/system_tests/__init__.py
diff --git a/mvesuvio/system_tests/stored_boot_back.npz → ...vesuvio/system_tests/stored_boot_back.npz b/mvesuvio/system_tests/stored_boot_back.npz → ...vesuvio/system_tests/stored_boot_back.npz
diff --git a/mvesuvio/system_tests/stored_boot_front.npz → ...esuvio/system_tests/stored_boot_front.npz b/mvesuvio/system_tests/stored_boot_front.npz → ...esuvio/system_tests/stored_boot_front.npz
diff --git a/mvesuvio/system_tests/stored_boot_yfit.npz → ...vesuvio/system_tests/stored_boot_yfit.npz b/mvesuvio/system_tests/stored_boot_yfit.npz → ...vesuvio/system_tests/stored_boot_yfit.npz
diff --git a/...o/system_tests/stored_joint_jack_back.npz → ...o/system_tests/stored_joint_jack_back.npz b/...o/system_tests/stored_joint_jack_back.npz → ...o/system_tests/stored_joint_jack_back.npz
diff --git a/.../system_tests/stored_joint_jack_front.npz → .../system_tests/stored_joint_jack_front.npz b/.../system_tests/stored_joint_jack_front.npz → .../system_tests/stored_joint_jack_front.npz
diff --git a/.../system_tests/stored_single_boot_back.npz → .../system_tests/stored_single_boot_back.npz b/.../system_tests/stored_single_boot_back.npz → .../system_tests/stored_single_boot_back.npz
diff --git a/...em_tests/stored_single_boot_back_yfit.npz → ...em_tests/stored_single_boot_back_yfit.npz b/...em_tests/stored_single_boot_back_yfit.npz → ...em_tests/stored_single_boot_back_yfit.npz
diff --git a/...ests/stored_spec_144-182_iter_3_GC_MS.npz → ...ests/stored_spec_144-182_iter_3_GC_MS.npz b/...ests/stored_spec_144-182_iter_3_GC_MS.npz → ...ests/stored_spec_144-182_iter_3_GC_MS.npz
diff --git a/mvesuvio/system_tests/stored_yspace_fit.npz → ...esuvio/system_tests/stored_yspace_fit.npz b/mvesuvio/system_tests/stored_yspace_fit.npz → ...esuvio/system_tests/stored_yspace_fit.npz
diff --git a/...vio/system_tests/stored_yspace_fit_GC.npz → ...vio/system_tests/stored_yspace_fit_GC.npz b/...vio/system_tests/stored_yspace_fit_GC.npz → ...vio/system_tests/stored_yspace_fit_GC.npz
diff --git a/mvesuvio/system_tests/test_analysis.py → src/mvesuvio/system_tests/test_analysis.py b/mvesuvio/system_tests/test_analysis.py → src/mvesuvio/system_tests/test_analysis.py
diff --git a/mvesuvio/system_tests/test_bootstrap.py → src/mvesuvio/system_tests/test_bootstrap.py b/mvesuvio/system_tests/test_bootstrap.py → src/mvesuvio/system_tests/test_bootstrap.py
diff --git a/...uvio/system_tests/test_config/__init__.py → ...uvio/system_tests/test_config/__init__.py b/...uvio/system_tests/test_config/__init__.py → ...uvio/system_tests/test_config/__init__.py
diff --git a/...ystem_tests/test_config/expr_for_tests.py → ...ystem_tests/test_config/expr_for_tests.py b/...ystem_tests/test_config/expr_for_tests.py → ...ystem_tests/test_config/expr_for_tests.py
diff --git a/...nput_ws/expr_for_tests_empty_backward.nxs → ...nput_ws/expr_for_tests_empty_backward.nxs b/...nput_ws/expr_for_tests_empty_backward.nxs → ...nput_ws/expr_for_tests_empty_backward.nxs
diff --git a/...input_ws/expr_for_tests_empty_forward.nxs → ...input_ws/expr_for_tests_empty_forward.nxs b/...input_ws/expr_for_tests_empty_forward.nxs → ...input_ws/expr_for_tests_empty_forward.nxs
diff --git a/.../input_ws/expr_for_tests_raw_backward.nxs → .../input_ws/expr_for_tests_raw_backward.nxs b/.../input_ws/expr_for_tests_raw_backward.nxs → .../input_ws/expr_for_tests_raw_backward.nxs
diff --git a/...s/input_ws/expr_for_tests_raw_forward.nxs → ...s/input_ws/expr_for_tests_raw_forward.nxs b/...s/input_ws/expr_for_tests_raw_forward.nxs → ...s/input_ws/expr_for_tests_raw_forward.nxs
diff --git a/...tests/test_config/expr_for_tests/output_files/spec_164-175_iter_1_GC_MS.npz_ySpaceFit.npz b/...tests/test_config/expr_for_tests/output_files/spec_164-175_iter_1_GC_MS.npz_ySpaceFit.npz
diff --git a/mvesuvio/system_tests/test_jackknife.py → src/mvesuvio/system_tests/test_jackknife.py b/mvesuvio/system_tests/test_jackknife.py → src/mvesuvio/system_tests/test_jackknife.py
diff --git a/mvesuvio/system_tests/test_yspace_fit.py → src/mvesuvio/system_tests/test_yspace_fit.py b/mvesuvio/system_tests/test_yspace_fit.py → src/mvesuvio/system_tests/test_yspace_fit.py
diff --git a/mvesuvio/system_tests/test_yspace_fit_GC.py → ...esuvio/system_tests/test_yspace_fit_GC.py b/mvesuvio/system_tests/test_yspace_fit_GC.py → ...esuvio/system_tests/test_yspace_fit_GC.py
diff --git a/mvesuvio/system_tests/tests_IC.py → src/mvesuvio/system_tests/tests_IC.py b/mvesuvio/system_tests/tests_IC.py → src/mvesuvio/system_tests/tests_IC.py
diff --git a/mvesuvio/system_tests/wsFinal.nxs → src/mvesuvio/system_tests/wsFinal.nxs b/mvesuvio/system_tests/wsFinal.nxs → src/mvesuvio/system_tests/wsFinal.nxs
diff --git a/mvesuvio/system_tests/wsFinal_ncp_0.nxs → src/mvesuvio/system_tests/wsFinal_ncp_0.nxs b/mvesuvio/system_tests/wsFinal_ncp_0.nxs → src/mvesuvio/system_tests/wsFinal_ncp_0.nxs
diff --git a/mvesuvio/system_tests/wsFinal_ncp_1.nxs → src/mvesuvio/system_tests/wsFinal_ncp_1.nxs b/mvesuvio/system_tests/wsFinal_ncp_1.nxs → src/mvesuvio/system_tests/wsFinal_ncp_1.nxs
diff --git a/mvesuvio/system_tests/wsFinal_ncp_2.nxs → src/mvesuvio/system_tests/wsFinal_ncp_2.nxs b/mvesuvio/system_tests/wsFinal_ncp_2.nxs → src/mvesuvio/system_tests/wsFinal_ncp_2.nxs
diff --git a/mvesuvio/system_tests/wsFinal_ncp_3.nxs → src/mvesuvio/system_tests/wsFinal_ncp_3.nxs b/mvesuvio/system_tests/wsFinal_ncp_3.nxs → src/mvesuvio/system_tests/wsFinal_ncp_3.nxs
diff --git a/src/mvesuvio/system_tests/wsFinal_ncp_sum.nxs b/src/mvesuvio/system_tests/wsFinal_ncp_sum.nxs
diff --git a/mvesuvio/vesuvio_analysis/ICHelpers.py → src/mvesuvio/vesuvio_analysis/ICHelpers.py b/mvesuvio/vesuvio_analysis/ICHelpers.py → src/mvesuvio/vesuvio_analysis/ICHelpers.py
diff --git a/mvesuvio/vesuvio_analysis/__init__.py → src/mvesuvio/vesuvio_analysis/__init__.py b/mvesuvio/vesuvio_analysis/__init__.py → src/mvesuvio/vesuvio_analysis/__init__.py
diff --git a/...io/vesuvio_analysis/analysis_functions.py → ...io/vesuvio_analysis/analysis_functions.py b/...io/vesuvio_analysis/analysis_functions.py → ...io/vesuvio_analysis/analysis_functions.py
diff --git a/mvesuvio/vesuvio_analysis/bootstrap.py → src/mvesuvio/vesuvio_analysis/bootstrap.py b/mvesuvio/vesuvio_analysis/bootstrap.py → src/mvesuvio/vesuvio_analysis/bootstrap.py
diff --git a/...io/vesuvio_analysis/bootstrap_analysis.py → ...io/vesuvio_analysis/bootstrap_analysis.py b/...io/vesuvio_analysis/bootstrap_analysis.py → ...io/vesuvio_analysis/bootstrap_analysis.py
diff --git a/..._analysis/deprecated_mantid_global_fit.py → ..._analysis/deprecated_mantid_global_fit.py b/..._analysis/deprecated_mantid_global_fit.py → ..._analysis/deprecated_mantid_global_fit.py
diff --git a/mvesuvio/vesuvio_analysis/fit_in_yspace.py → ...vesuvio/vesuvio_analysis/fit_in_yspace.py b/mvesuvio/vesuvio_analysis/fit_in_yspace.py → ...vesuvio/vesuvio_analysis/fit_in_yspace.py
diff --git a/mvesuvio/vesuvio_analysis/procedures.py → src/mvesuvio/vesuvio_analysis/procedures.py b/mvesuvio/vesuvio_analysis/procedures.py → src/mvesuvio/vesuvio_analysis/procedures.py
diff --git a/mvesuvio/vesuvio_analysis/run_script.py → src/mvesuvio/vesuvio_analysis/run_script.py b/mvesuvio/vesuvio_analysis/run_script.py → src/mvesuvio/vesuvio_analysis/run_script.py
diff --git a/mvesuvio/vesuvio_analysis/tests/__init__.py → ...esuvio/vesuvio_analysis/tests/__init__.py b/mvesuvio/vesuvio_analysis/tests/__init__.py → ...esuvio/vesuvio_analysis/tests/__init__.py
diff --git a/...analysis/tests/test_analysis_functions.py → ...analysis/tests/test_analysis_functions.py b/...analysis/tests/test_analysis_functions.py → ...analysis/tests/test_analysis_functions.py