Python library for setting up, running and analyzing parameter sweeps with cell based models. This package was specifically designed for CompuCell3D but can also be used with other tools, as shown in this bookchapter.

Installation

Please see the documentation for more extensive installation instructions.

1. Install python 2.x
2. Install prerequisites
   • numpy
   • scipy
   • python imaging library (PIL)
     • The PIL fork Pillow may work as well, but this is not tested.
   • mahotas
   • pymorph
3. Move CC3DSimUtils to your preferred location.
4. Make sure python can find CC3DSimUtils (use a OR b). a. Add the path to CC3DSimUtils to the global pythonpath. b. Add the path to CC3DSimUtils to the pythonpath in your python code:

import sys
sys.path.append('PATHTOCC3DSIMUTILS')

Documentation

• HTML documentation: doc/html/CC3DSimUtils.html
• PDF documentation: doc/latex/CC3DSimUtils.pdf