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If you run into encoding issues with loading modules, please see https://github.com/marklogic-community/ml-gradle/issues/155 . The solution most likely involves making the following call to modify your GRADLE_OPTS:
export GRADLE_OPTS="-Dfile.encoding=utf-8"
Or set it to whatever encoding that you need for the content in your modules.
Also, per this stackoverflow post, you can add the following to gradle.properties:
org.gradle.jvmargs='-Dfile.encoding=UTF-8'