A tool for representing genomic potential and transcriptomic expression into KEGG pathways

Clean, minimal, accessible reproduction of DeepSeek R1-Zero

Large Language Models (LLMs) tutorials & sample scripts, ft. langchain, openai, llamaindex, gpt, chromadb & pinecone

A Docker container for the BookStack documentation wiki

Highly configurable Hugo landing page theme

Course materials for BIOST561

Python API wrapper around Trello's API

Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2024

Genomic Islands From Roary Pangenomes

Variational AutoEncoders for Protein Sequence/Function data

Myers Research Group's official webpage

Hands-on Nextflow training materials and information

Plotting scripts for long read sequencing data

Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf

The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python

Google Drive Public File Downloader when Curl/Wget Fails

Graph-based assembly phasing

Command-line tool for visualizing batches of prokaryotic genomes

An open-source RAG-based tool for chatting with your documents.

OneDrive Client for Linux

An unofficial Beamer template based on the original PPTX UGM Template

A modular graph-based Retrieval-Augmented Generation (RAG) system

A small module for comparing efficiency of resource use among users of the Torque queuing system.

Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake

a python package for automated generation of phylogenetic trees from genbank files

Axolotl is a Python library for scalable genome analysis, addressing the gap in tools for handling the rapid growth of genomic data with easy parallel processing.

A comprehensive guide to building RAG-based LLM applications for production.