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1. morinlab/FFPolish morinlab/FFPolish Public

   Python 2 4

2. cidgoh/ontotrek cidgoh/ontotrek Public

   A 3d ontology visualizer focusing on OBOFoundry.org ontologies

   JavaScript 6

3. WGS-TB/NGSweep WGS-TB/NGSweep Public

   Matthew's pipeline for preprocessing NGS data

   Python

4. WGS-TB/PathOGiST WGS-TB/PathOGiST Public

   This repository contains the pipeline for the multi-criterion genomic analysis of bacterial pathogens

   Python 1

5. rdmorin/mutation_rainstorm rdmorin/mutation_rainstorm Public

   Compute points for a cohort-wide variation on rainfall plots ("rainstorms") and identify mutation peaks

   R 10 4

6. cidgoh/bacpaq cidgoh/bacpaq Public

   Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data

   Nextflow 5 3