fix

maxplanck-ie · Nov 15, 2024 · 12f29d0 · 12f29d0
1 parent 4b2944e
commit 12f29d0
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/snakePipes/shared/rules/umi_tools.snakefile b/snakePipes/shared/rules/umi_tools.snakefile
@@ -86,7 +86,7 @@ else:
     elif aligner == "STAR" or aligner == "HISAT2" :
         rule filter_reads:
             input:
-                bamfile = aligner + "/{sample}.bam"
+                bamfile = "filtered_bam/{sample}.filtered.tmp.bam"
             output:
                 bamfile = "filtered_bam/{sample}.filtered.bam"
             shell: """