organism.yaml

maxplanck-ie · Aug 3, 2023 · b625ab1 · b625ab1
1 parent b8707a4
commit b625ab1
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diff --git a/.ci_stuff/organism.yaml b/.ci_stuff/organism.yaml
@@ -10,6 +10,7 @@ bwameth_index: "/tmp/genome.fa"
 bwameth2_index: "/tmp/genome.fa"
 known_splicesites: ".ci_stuff/gencode/m9/HISAT2/splice_sites.txt"
 star_index: ".ci_stuff/STARIndex/"
+salmon_index: ".ci_stuff/SalmonIndex/"
 genes_bed: "/tmp/genes.bed"
 genes_gtf: "/tmp/genes.gtf"
 extended_coding_regions_gtf: ".ci_stuff/gencode/m9/genes.slop.gtf"

diff --git a/.ci_stuff/spikein_organism.yaml b/.ci_stuff/spikein_organism.yaml
@@ -8,6 +8,7 @@ bwa_index: ".ci_stuff/BWAindex/genome.fa"
 bwameth_index: "/tmp/genome.fa"
 known_splicesites: ".ci_stuff/gencode/m9/HISAT2/splice_sites.txt"
 star_index: ".ci_stuff/STARIndex/"
+salmon_index: ".ci_stuff/SalmonIndex/"
 genes_bed: "/tmp/genes.bed"
 genes_gtf: "/tmp/genes.gtf"
 spikein_genes_gtf: "/tmp/spikein_genes.gtf"