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mdshw5 merged 80 commits intodevelopmdshw5/pyfaidx:developfrom mastermdshw5/pyfaidx:masterCopy head branch name to clipboardApr 4, 2024

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Commits on Jul 22, 2022

• Merge pull request #196 from mdshw5/develop

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Commits on Jul 26, 2022

• Don't upload tagged releases to test pypi

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Commits on Oct 25, 2022

• Update python versions in CI

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• Update pypi.yml

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Commits on Oct 26, 2022

• Update main.yml

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• Exclude macOS due to missing liblzma

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• Update main.yml

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Commits on Oct 27, 2022

• Update main.yml

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Commits on Oct 30, 2022

• Add use case for indexing FASTA with suppressed output

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• Merge pull request #198 from mdshw5/docs/invert-match-usage

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• Update main.yml

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• Merge pull request #197 from mdshw5/python_3.11

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Commits on Nov 25, 2022

• fix bgzf test failure with biopython 1.80

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Commits on Dec 1, 2022

• Remove Python 2.6 compatibility

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• Remove "provides" argument, it is not used

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• Use pyproject.toml instead of setup.py

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• Update supported Python versions according to GitHub Actions test matrix

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• Add project homepage (link to GitHub repository)

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Commits on Dec 5, 2022

• Merge pull request #199 from emollier/biopython-1.80

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Commits on Dec 6, 2022

• Merge pull request #200 from marcelm/modernize

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• install xz dependency under macOS

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• Update main.yml

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• pin pysam version

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Commits on Dec 7, 2022

• fix ResourceWarning: unclosed file

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• Merge pull request #202 from siebrenf/patch-2

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• unpin pysam

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• Delete .travis.yml

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• Clean up CI workflow

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• Specify action versions

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• Bump version of setuptools

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• Update pypi.yml

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• Update pypi.yml

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Commits on Jan 12, 2023

• Move the --invert-match example to the top

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• Merge pull request #204 from mdshw5/mdshw5-patch-1

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Commits on Jan 22, 2023

• re filtering for IUPAC bases

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• draft solution

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• verified Counter was better for IUPAC

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Commits on Jan 23, 2023

• implemented change into __init__ Sequence class

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• fixed Sequence.gc_iupac, confirmed new functions

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Commits on Jan 30, 2023

• reverted to s.count(), cleaned up presentation

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• removed comments to match formatting

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Commits on Feb 9, 2023

• Update main.yml

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• Update pypi.yml

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Commits on Feb 14, 2023

• Update main.yml

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• Remove pysam from dev-requirements

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• Update test_FastaVariant.py

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• Merge pull request #205 from Bardia-Masudy/IUPAC_gc

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Commits on Feb 15, 2023

• Run actions on release

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Commits on Feb 16, 2023

• Add setuptools dependency to fix #206

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• Add test case for cli script version string

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• Test pyfaidx module version

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• Update test_feature_indexing.py

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• Remove version test for cli script

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• Merge pull request #207 from mdshw5/206-missing-setuptools-dependency-in-072

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Commits on Feb 28, 2023

• Update README.rst

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Commits on Jun 30, 2023

• rename codecov config file

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• Update codecov action

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Commits on Sep 22, 2023

• Merge pull request #210 from mdshw5/mdshw5-patch-2

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• Replace usage of pkg_resources API

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• Update pyproject.toml

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• Merge pull request #213 from mdshw5/mdshw5-patch-3

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Commits on Jan 7, 2024

• remove old Python 2 hybridation

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• add missing import on builtins

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Commits on Jan 8, 2024

• Merge pull request #215 from a-detiste/master

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• Update README.rst

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Commits on Jan 16, 2024

• Fix version number

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Commits on Jan 17, 2024

• Update __init__.py

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Commits on Jan 18, 2024

• Merge pull request #216 from rraadd88/patch-2

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Commits on Jan 19, 2024

• Add a better bgzip example command

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