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chore(#123): Enhance Automated Tests for CHT & OpenMRS Endpoints in Mediator #152

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chore(#123): Enhance Automated Tests for CHT & OpenMRS Endpoints in Mediator #152

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d31b038
fix(#123): add validation for openmrs id and search patient in openmrs
Nov 8, 2024
f94d709
fix(#123): fixing Openmrs patient to cht
Nov 22, 2024
68dd2f9
fix(#123): complete openmrs patient to cht workflow
Nov 27, 2024
c8638b7
fix(#123): improve cht hierarchy
Dec 5, 2024
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20 changes: 12 additions & 8 deletions mediator/test/cht-resource-factories.ts
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Original file line number Diff line number Diff line change
@@ -1,11 +1,11 @@
import { randomUUID } from 'crypto';
import { Factory } from 'rosie';

const PlaceFactory = Factory.define('place')
export const PlaceFactory = Factory.define('place')
.option('placeId', randomUUID())
.attr('name', 'CHP Branch One')
.attr('type', 'district_hospital')
.attr('parent', ['placeId'], function (placeId) {
.attr('placeId', ['placeId'], function (placeId) {
return placeId;
});

Expand All @@ -14,28 +14,32 @@ const ContactFactory = Factory.define('contact')
.attr('phone', '+2868917046');

export const UserFactory = Factory.define('user')
.option('placeId')
.option('parentPlace')
.attr('password', 'Dakar1234')
.attr('username', 'maria')
.attr('type', 'chw')
.attr('place', ['placeId'], function (placeId) {
return PlaceFactory.build({}, { placeId });
.attr('place', ['parentPlace'], function (parentPlace) {
return {
"name": "Mary's Area",
"type": "health_center",
"parent": parentPlace
};
})
.attr('contact', function () {
return ContactFactory.build();
});

export const PatientFactory = Factory.define('patient')
.option('placeId')
.option('place')
.attr('name', 'John Test')
.attr('phone', '+2548277217095')
.attr('date_of_birth', '1980-06-06')
.attr('sex', 'male')
.attr('type', 'person')
.attr('role', 'patient')
.attr('contact_type', 'patient')
.attr('place', ['placeId'], function (placeId) {
return placeId;
.attr('place', ['place'], function (place) {
return place;
});

const DocsFieldsFactory = Factory.define('fields')
Expand Down
67 changes: 67 additions & 0 deletions mediator/test/openmrs-resource-factories.ts
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Original file line number Diff line number Diff line change
@@ -0,0 +1,67 @@
import { randomUUID } from 'crypto';
import { Factory } from 'rosie';

export const OpenMRSPatientFactory = new Factory()
.option('placeId')
.attr('resourceType', 'Patient')
.attr('id', () => randomUUID())
.attr('meta', () => ({
versionId: '2',
lastUpdated: new Date().toISOString(),
source: 'cht#rjEgeBRWROBrChB7'
}))
.attr('text', () => ({
status: 'generated',
div: '<div xmlns="http://www.w3.org/1999/xhtml"><div class="hapiHeaderText">OpenMRS <b>PATIENT </b></div><table class="hapiPropertyTable"><tbody><tr><td>Identifier</td><td>52802</td></tr><tr><td>Date of birth</td><td><span>06 June 1980</span></td></tr></tbody></table></div>'
}))
.attr('identifier', () => [
{
id: randomUUID(),
use: 'official',
type: { text: 'CHT Patient ID' },
value: Math.floor(Math.random() * 100000).toString()
},
{
id: randomUUID(),
use: 'secondary',
type: { text: 'CHT Document ID' },
value: randomUUID()
},
{
id: randomUUID(),
use: 'secondary',
type: { text: 'OpenMRS Patient UUID' },
value: randomUUID()
}
])
.attr('name', () => [
{
id: randomUUID(),
family: 'Patient',
given: ['OpenMRS']
}
])
.attr('telecom', () => [
{
id: randomUUID(),
value: '+2548277217095'
}
])
.attr('gender', 'male')
.attr('birthDate', '1980-06-06')
.attr('address', ['placeId'], (placeId) => [
{
id: randomUUID(),
line: ['123 Main St'],
city: 'Nairobi',
country: 'Kenya',
extension: [{
extension: [
{
url: 'http://fhir.openmrs.org/ext/address#address4',
valueString: `FCHV Area [${placeId}]`
}
]
}]
}
]);
104 changes: 75 additions & 29 deletions mediator/test/workflows.spec.ts
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Original file line number Diff line number Diff line change
@@ -1,13 +1,15 @@
import request from 'supertest';
import { OPENHIM, CHT, FHIR, OPENMRS } from '../config';
import {
UserFactory, PatientFactory, TaskReportFactory
UserFactory, PatientFactory, TaskReportFactory, PlaceFactory
} from './cht-resource-factories';
import {
EndpointFactory as EndpointFactoryBase,
OrganizationFactory as OrganizationFactoryBase,
ServiceRequestFactory as ServiceRequestFactoryBase
} from '../src/middlewares/schemas/tests/fhir-resource-factories';
import { OpenMRSPatientFactory } from './openmrs-resource-factories';

const { generateAuthHeaders } = require('../../configurator/libs/authentication');

jest.setTimeout(50000);
Expand Down Expand Up @@ -68,26 +70,28 @@ const createOpenMRSIdType = async (name: string) => {
}
};

let placeId: string;
const parentPlace = PlaceFactory.build();
let chwUserName: string;
let chwPassword: string;
let contactId: string;
let patientId: string;
let parentPlaceId: string;
let placeId: string;


const configureCHT = async () => {
const createPlaceResponse = await request(CHT.url)
.post('/api/v1/places')
.auth(CHT.username, CHT.password)
.send({ 'name': 'CHP Branch Two', 'type': 'district_hospital' });
.send(parentPlace);

if (createPlaceResponse.status === 200 && createPlaceResponse.body.ok === true) {
placeId = createPlaceResponse.body.id;
parentPlaceId = createPlaceResponse.body.id;
} else {
throw new Error(`CHT place creation failed: Reason ${createPlaceResponse.status}`);
}

const user = UserFactory.build({}, { placeId: placeId });

const user = UserFactory.build({}, { parentPlace: parentPlaceId });
chwUserName = user.username;
chwPassword = user.password;

Expand All @@ -100,6 +104,15 @@ const configureCHT = async () => {
} else {
throw new Error(`CHT user creation failed: Reason ${createUserResponse.status}`);
}

const retrieveChtHealthCenterResponse = await request(CHT.url)
.get('/api/v2/users/maria')
.auth(CHT.username, CHT.password);
if (retrieveChtHealthCenterResponse.status === 200) {
placeId = retrieveChtHealthCenterResponse.body.place[0]._id;
} else {
throw new Error(`CHT health center retrieval failed: Reason ${retrieveChtHealthCenterResponse.status}`);
}
};

describe('Workflows', () => {
Expand All @@ -113,15 +126,14 @@ describe('Workflows', () => {
});

describe('OpenMRS workflow', () => {
it('Should follow the CHT Patient to OpenMRS workflow', async () => {
it('should follow the CHT Patient to OpenMRS workflow', async () => {
const checkMediatorResponse = await request(FHIR.url)
.get('/mediator/')
.auth(FHIR.username, FHIR.password);

expect(checkMediatorResponse.status).toBe(200);
expect(checkMediatorResponse.body.status).toBe('success');

const patient = PatientFactory.build({}, { name: 'OpenMRS patient', placeId: placeId });
const patient = PatientFactory.build({name: 'CHTOpenMRS Patient', phone: '+2548277217095'}, { place: placeId });

const createPatientResponse = await request(CHT.url)
.post('/api/v1/people')
Expand All @@ -132,57 +144,91 @@ describe('Workflows', () => {
expect(createPatientResponse.body.ok).toEqual(true);
patientId = createPatientResponse.body.id;

await new Promise((r) => setTimeout(r, 5000));
await new Promise((r) => setTimeout(r, 10000));

const retrieveFhirPatientIdResponse = await request(FHIR.url)
.get('/fhir/Patient/?identifier=' + patientId)
.auth(FHIR.username, FHIR.password);

expect(retrieveFhirPatientIdResponse.status).toBe(200);
expect(retrieveFhirPatientIdResponse.body.total).toBe(1);

const triggerOpenMrsSyncPatientResponse = await request(FHIR.url)
.get('/mediator/openmrs/sync')
.auth(FHIR.username, FHIR.password)
.send();

expect(triggerOpenMrsSyncPatientResponse.status).toBe(200);

await new Promise((r) => setTimeout(r, 5000));
await new Promise((r) => setTimeout(r, 10000));

const retrieveOpenMrsPatientIdResponse = await request(OPENMRS.url)
.get('/Patient/?identifier=' + patientId)
.auth(OPENMRS.username, OPENMRS.password);

expect(retrieveOpenMrsPatientIdResponse.status).toBe(200);
//this should work after fixing openmrs to have latest fhir omod and cht identifier defined.
expect(retrieveOpenMrsPatientIdResponse.body.total).toBe(1);

//Validate HAPI updated ids

const openMrsPatientId = retrieveOpenMrsPatientIdResponse.body.entry[0].resource.id;
const retrieveUpdatedFhirPatientResponse = await request(FHIR.url)
.get(`/fhir/Patient/${patientId}`)
.auth(FHIR.username, FHIR.password);
expect(retrieveUpdatedFhirPatientResponse.status).toBe(200);
expect(retrieveUpdatedFhirPatientResponse.body.identifier).toEqual(
expect.arrayContaining([
expect.objectContaining({
value: openMrsPatientId,
})
])
);

const searchOpenMrsPatientResponse = await request(OPENMRS.url)
.get(`/Patient/?given=CHTOpenMRS&family=Patient`)
.auth(OPENMRS.username, OPENMRS.password);
expect(searchOpenMrsPatientResponse.status).toBe(200);
expect(searchOpenMrsPatientResponse.body.total).toBe(1);
expect(searchOpenMrsPatientResponse.body.entry[0].resource.id).toBe(openMrsPatientId);
});

//skipping this test because is incomplete.
it.skip('Should follow the OpenMRS Patient to CHT workflow', async () => {
it('should follow the OpenMRS Patient to CHT workflow', async () => {
const checkMediatorResponse = await request(FHIR.url)
.get('/mediator/')
.auth(FHIR.username, FHIR.password);

expect(checkMediatorResponse.status).toBe(200);

//TODO: Create a patient using openMRS api
const openMrsPatient = OpenMRSPatientFactory.build({}, {placeId: parentPlace.placeId});

const createOpenMrsPatientResponse = await request(OPENMRS.url)
.post('/Patient')
.auth(OPENMRS.username, OPENMRS.password)
.send(openMrsPatient);

expect(createOpenMrsPatientResponse.status).toBe(201);
expect(createOpenMrsPatientResponse.body).toHaveProperty('id');

const openMrsPatientId = createOpenMrsPatientResponse.body.id;

await new Promise((r) => setTimeout(r, 10000));

const triggerOpenMrsSyncPatientResponse = await request('https://localhost:5002')
.get('/mediator/openmrs/sync')
.auth(OPENMRS.username, OPENMRS.password)
.send();
expect(triggerOpenMrsSyncPatientResponse.status).toBe(200);

await new Promise((r) => setTimeout(r, 20000));

const retrieveFhirPatientIdResponse = await request(FHIR.url)
.get('/fhir/Patient/?identifier=' + patientId)
.get('/fhir/Patient/?identifier=' + openMrsPatientId)
.auth(FHIR.username, FHIR.password);

expect(retrieveFhirPatientIdResponse.status).toBe(200);
//expect(retrieveFhirPatientIdResponse.body.total).toBe(1);
expect(retrieveFhirPatientIdResponse.body.total).toBe(1);

const chtPatientId = retrieveFhirPatientIdResponse.body.entry[0].resource.identifier[1].value;

//TODO: retrieve and validate patient from CHT api
//trigger openmrs sync
//validate id
const retrieveChtPatientResponse = await request(CHT.url)
.get('/api/v1/person/' + chtPatientId)
.auth(CHT.username, CHT.password);
expect(retrieveChtPatientResponse.status).toBe(200);
});

});

describe('Loss To Follow-Up (LTFU) workflow', () => {
Expand Down Expand Up @@ -231,7 +277,7 @@ describe('Workflows', () => {
expect(retrieveOrganizationResponse.status).toBe(200);
expect(retrieveOrganizationResponse.body.total).toBe(1);

const patient = PatientFactory.build({}, { name: 'LTFU patient', placeId: placeId });
const patient = PatientFactory.build({}, { name: 'LTFU patient', place: placeId });

const createPatientResponse = await request(CHT.url)
.post('/api/v1/people')
Expand Down Expand Up @@ -262,7 +308,7 @@ describe('Workflows', () => {
expect(sendMediatorServiceRequestResponse.status).toBe(201);
encounterUrl = sendMediatorServiceRequestResponse.body.criteria;

const taskReport = TaskReportFactory.build({}, { placeId, contactId, patientId });
const taskReport = TaskReportFactory.build({}, { placeId: placeId, contactId, patientId });

const submitChtTaskResponse = await request(CHT.url)
.post('/medic/_bulk_docs')
Expand Down
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