add fhir contact point map to initializer

api-2.5/pom.xml

@@ -0,0 +1,75 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0"
+         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+    <modelVersion>4.0.0</modelVersion>
+    <parent>
+        <groupId>org.openmrs.module</groupId>
+        <artifactId>initializer</artifactId>
+        <version>2.6.0-SNAPSHOT</version>
+    </parent>
+
+    <artifactId>initializer-api-2.5</artifactId>
+    <packaging>jar</packaging>
+    <name>Initializer API 2.5</name>
+    <description>API 2.5 project for Initializer</description>
+
+    <properties>
+        <openmrsPlatformVersion>${openmrsVersion2.5}</openmrsPlatformVersion>
+    </properties>
+
+    <dependencies>
+        <dependency>
+            <groupId>${project.parent.groupId}</groupId>
+            <artifactId>${project.parent.artifactId}-api</artifactId>
+            <version>${project.parent.version}</version>
+            <scope>provided</scope>
+        </dependency>
+
+        <dependency>
+            <groupId>${project.parent.groupId}</groupId>
+            <artifactId>${project.parent.artifactId}-api</artifactId>
+            <version>${project.parent.version}</version>
+            <scope>test</scope>
+            <type>test-jar</type>
+        </dependency>
+
+        <dependency>
+            <groupId>${project.parent.groupId}</groupId>
+            <artifactId>${project.parent.artifactId}-api-2.4</artifactId>
+            <version>${project.parent.version}</version>
+            <scope>provided</scope>
+        </dependency>
+
+        <dependency>
+            <groupId>${project.parent.groupId}</groupId>
+            <artifactId>${project.parent.artifactId}-api-2.3</artifactId>
+            <version>${project.parent.version}</version>
+            <scope>provided</scope>
+        </dependency>
+
+        <dependency>
+            <groupId>${project.parent.groupId}</groupId>
+            <artifactId>${project.parent.artifactId}-api-2.3</artifactId>
+            <version>${project.parent.version}</version>
+            <scope>test</scope>
+            <type>test-jar</type>
+        </dependency>
+
+        <dependency>
+            <groupId>${project.parent.groupId}</groupId>
+            <artifactId>${project.parent.artifactId}-api-2.2</artifactId>
+            <version>${project.parent.version}</version>
+            <scope>provided</scope>
+        </dependency>
+
+        <dependency>
+            <groupId>${project.parent.groupId}</groupId>
+            <artifactId>${project.parent.artifactId}-api-2.2</artifactId>
+            <version>${project.parent.version}</version>
+            <scope>test</scope>
+            <type>test-jar</type>
+        </dependency>
+    </dependencies>
+
+</project>

api-2.5/src/main/java/org/openmrs/module/initializer/api/fhir/cpm/FhirContactPointMapCsvParser.java

@@ -0,0 +1,138 @@
+package org.openmrs.module.initializer.api.fhir.cpm;
+
+import org.openmrs.PersonAttributeType;
+import org.openmrs.annotation.OpenmrsProfile;
+import org.openmrs.api.LocationService;
+import org.openmrs.api.PersonService;
+import org.openmrs.api.ProviderService;
+import org.openmrs.attribute.BaseAttributeType;
+import org.openmrs.module.fhir2.api.FhirContactPointMapService;
+import org.openmrs.module.initializer.Domain;
+import org.openmrs.module.fhir2.model.FhirContactPointMap;
+import org.openmrs.module.initializer.api.BaseLineProcessor;
+import org.openmrs.module.initializer.api.CsvLine;
+import org.openmrs.module.initializer.api.CsvParser;
+import org.springframework.beans.factory.annotation.Autowired;
+
+@OpenmrsProfile(modules = { "fhir2:1.11.* - 9.*" }, openmrsPlatformVersion = "2.5.13 - 2.5.*, 2.6.2 - 2.6.*, 2.7.* - 9.*")
+public class FhirContactPointMapCsvParser extends CsvParser<FhirContactPointMap, BaseLineProcessor<FhirContactPointMap>> {
+
+	public static final String ATTRIBUTE_TYPE_DOMAIN_HEADER = "Entity name";
+
+	public static final String ATTRIBUTE_TYPE = "Attribute type";
+
+	private static final String LOCATION = "location";
+
+	private static final String PERSON = "person";
+
+	private static final String PROVIDER = "provider";
+
+	private final LocationService locationService;
+
+	private final PersonService personService;
+
+	private final ProviderService providerService;
+
+	private final FhirContactPointMapService fhirContactPointMapService;
+
+	@Autowired
+	protected FhirContactPointMapCsvParser(FhirContactPointMapService fhirContactPointMapService,BaseLineProcessor<FhirContactPointMap> lineProcessor,
+			LocationService locationService, PersonService personService, ProviderService providerService) {
+		super(lineProcessor);
+		this.fhirContactPointMapService = fhirContactPointMapService;
+		this.locationService = locationService;
+		this.personService = personService;
+		this.providerService = providerService;
+	}
+
+	@Override
+	public FhirContactPointMap bootstrap(CsvLine line) throws IllegalArgumentException {
+		FhirContactPointMap contactPointMap = null;
+		if (line.getUuid() != null) {
+			contactPointMap = fhirContactPointMapService.getFhirConactPointMapByUuid(line.getUuid());
+		}
+
+		if (contactPointMap != null) {
+			return contactPointMap;
+		}
+
+		String attributeTypeDomain = line.get(ATTRIBUTE_TYPE_DOMAIN_HEADER, true);
+		String attributeType = line.get(ATTRIBUTE_TYPE, true);
+
+		if (attributeTypeDomain.equals(PERSON)) {
+			PersonAttributeType personAttributeType = getPersonAttributeType(attributeType);
+
+			if (personAttributeType == null) {
+				throw new IllegalArgumentException("PersonAttributeType " + attributeType
+						+ " does not exist. Please ensure your Initializer configuration contains this attribute type.");
+			}
+
+			contactPointMap = fhirContactPointMapService.getFhirContactPointMapForPersonAttributeType(personAttributeType)
+					.orElse(null);
+		} else {
+			BaseAttributeType<?> baseAttributeType = getBaseAttributeType(attributeTypeDomain, attributeType);
+
+			if (baseAttributeType == null) {
+				throw new IllegalArgumentException(
+						"Could not find attribute type " + attributeType + " for attribute domain " + attributeTypeDomain);
+			}
+
+			contactPointMap = fhirContactPointMapService.getFhirContactPointMapForAttributeType(baseAttributeType)
+					.orElse(null);
+		}
+
+		if (contactPointMap != null) {
+			return contactPointMap;
+		}
+
+		return new FhirContactPointMap();
+	}
+
+
+	@Override
+	public FhirContactPointMap save(FhirContactPointMap instance) {
+		return fhirContactPointMapService.saveFhirContactPointMap(instance);
+	}
+
+	@Override
+	public Domain getDomain() {
+		return Domain.FHIR_CONTACT_POINT_MAP;
+	}
+
+	protected PersonAttributeType getPersonAttributeType(String attributeType) {
+		PersonAttributeType personAttributeType = personService.getPersonAttributeTypeByName(attributeType);
+
+		if (personAttributeType != null) {
+			return personAttributeType;
+		}
+
+		personAttributeType = personService.getPersonAttributeTypeByUuid(attributeType);
+
+		return personAttributeType;
+	}
+
+	protected BaseAttributeType<?> getBaseAttributeType(String attributeDomain, String attributeType) {
+		BaseAttributeType<?> baseAttributeType = null;
+
+		switch (attributeDomain) {
+			case LOCATION:
+				baseAttributeType = locationService.getLocationAttributeTypeByName(attributeType);
+
+				if (baseAttributeType != null) {
+					return baseAttributeType;
+				}
+
+				return locationService.getLocationAttributeTypeByUuid(attributeType);
+				break;
+			case PROVIDER:
+				baseAttributeType = providerService.getProviderAttributeTypeByName(attributeType);
+
+				if (baseAttributeType != null) {
+					return baseAttributeType;
+				}
+
+				return providerService.getProviderAttributeTypeByUuid(attributeType);
+			break;
+		}
+	}
+}

api-2.5/src/main/java/org/openmrs/module/initializer/api/fhir/cpm/FhirContactPointMapLineProcessor.java

@@ -0,0 +1,50 @@
+package org.openmrs.module.initializer.api.fhir.cpm;
+
+import org.apache.commons.lang3.StringUtils;
+import org.hl7.fhir.r4.model.ContactPoint;
+import org.openmrs.annotation.OpenmrsProfile;
+import org.openmrs.module.fhir2.model.FhirContactPointMap;
+import org.openmrs.module.initializer.api.BaseLineProcessor;
+import org.openmrs.module.initializer.api.CsvLine;
+
+import static org.openmrs.module.initializer.api.fhir.cpm.FhirContactPointMapCsvParser.ATTRIBUTE_TYPE_DOMAIN_HEADER;
+
+@OpenmrsProfile(modules = { "fhir2:1.11.* - 9.*" }, openmrsPlatformVersion = "2.5.13 - 2.5.*, 2.6.2 - 2.6.*, 2.7.* - 9.*")
+public class FhirContactPointMapLineProcessor extends BaseLineProcessor<FhirContactPointMap> {
+
+	private static final String SYSTEM_HEADER = "system";
+	private static final String USE_HEADER = "use";
+	private static final String RANK_HEADER = "rank";
+	@Override
+	public FhirContactPointMap fill(FhirContactPointMap instance, CsvLine line) throws IllegalArgumentException {
+		String uuid = line.getUuid();
+
+		if (StringUtils.isNotBlank(uuid)) {
+			instance.setUuid(line.getUuid());
+		}
+
+		line.get(ATTRIBUTE_TYPE_DOMAIN_HEADER, true);
+
+		String system = line.get(SYSTEM_HEADER, false);
+		String use = line.get(USE_HEADER, false);
+		String rank = line.get(RANK_HEADER, false);
+
+		if (system != null) {
+			instance.setSystem(ContactPoint.ContactPointSystem.valueOf(system));
+		}
+
+		if (use != null) {
+			instance.setUse(ContactPoint.ContactPointUse.valueOf(use));
+		}
+
+		if (rank != null) {
+			int rankInt = Integer.parseInt(rank);
+			if (rankInt < 1) {
+				throw new IllegalArgumentException("Rank must be a positive integer, i.e., 1+");
+			}
+			instance.setRank(rankInt);
+		}
+
+		return instance;
+	}
+}

api-2.5/src/main/java/org/openmrs/module/initializer/api/fhir/cpm/FhirContactPointMapLoader.java

@@ -0,0 +1,16 @@
+package org.openmrs.module.initializer.api.fhir.cpm;
+
+import org.openmrs.annotation.OpenmrsProfile;
+import org.openmrs.module.fhir2.model.FhirContactPointMap;
+import org.openmrs.module.initializer.api.loaders.BaseCsvLoader;
+import org.springframework.beans.factory.annotation.Autowired;
+
+@OpenmrsProfile(modules = { "fhir2:1.11.* - 9.*" }, openmrsPlatformVersion = "2.5.13 - 2.5.*, 2.6.2 - 2.6.*, 2.7.* - 9.*")
+public class FhirContactPointMapLoader extends BaseCsvLoader<FhirContactPointMap, FhirContactPointMapCsvParser> {
+
+	@Autowired
+	public void setParser(FhirContactPointMapCsvParser parser) {
+		this.parser = parser;
+	}
+
+}

api-2.5/src/test/java/org/openmrs/module/initializer/DomainBaseModuleContextSensitive_2_5_Test.java

@@ -0,0 +1,18 @@
+/**
+ * This Source Code Form is subject to the terms of the Mozilla Public License,
+ * v. 2.0. If a copy of the MPL was not distributed with this file, You can
+ * obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under
+ * the terms of the Healthcare Disclaimer located at http://openmrs.org/license.
+ *
+ * Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS
+ * graphic logo is a trademark of OpenMRS Inc.
+ */
+package org.openmrs.module.initializer;
+
+public abstract class DomainBaseModuleContextSensitive_2_5_Test extends DomainBaseModuleContextSensitiveTest {
+
+	@Override
+	public void updateSearchIndex() {
+		// to prevent Data Filter's 'Illegal Record Access'
+	}
+}

api-2.5/src/test/resources/testAppDataDir/configuration/fhircontactpointmap/contactPointMap.csv

@@ -0,0 +1,5 @@
+Uuid,Void/Retire,Entity name,Attribute Type,System,Use,Rank,_order:1000
+fa48acc4-ef1f-46d6-b0af-150b00ddee9d,,person,717ec942-3c4a-11ea-b024-ffc81a23382e,phone,work,1,
+,,person,PAT_RENAME_NEW_NAME,phone,home,,
+bcf23315-a236-42aa-be95-b9e0931e22b0,,provider,Provider Speciality,email,home,2,
+800e48ba-666c-445c-b871-68e54eec6de8,,location,e7aacc6e-d151-4d9e-a808-6ed9ff761212,phone,temp,3,

api/src/main/java/org/openmrs/module/initializer/Domain.java

@@ -46,6 +46,7 @@ public enum Domain {
 	COHORT_ATTRIBUTE_TYPES,
 	FHIR_CONCEPT_SOURCES,
 	FHIR_PATIENT_IDENTIFIER_SYSTEMS,
+	FHIR_CONTACT_POINT_MAP,
 	AMPATH_FORMS,
 	AMPATH_FORMS_TRANSLATIONS,
 	HTML_FORMS;