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fix assembleContigs for long reads #2907

Job	Run time
init	10s
run / Init	3s
run / :build	1m 8s
run / archive	0s
run / library	0s
run / :setup tests matrix	0s
run / docker	0s
run / :test (unit)	0s
run / notify docker build	15s
run / notify archive build	9s
run / can release	0s
run / notify library build	10s
run / :test (int)	0s
run / notify unit test	0s
run / :test (reg)	0s
run / update the latest build link on the CDN	0s
run / notify integration test	0s
run / notify regression test	0s
run / confirm release	0s
run / :test (reg) create pr	0s
run / fail workflow on regression tests changes	0s
run / notify review required	0s
run / github release	0s
run / notify regression tests changes	0s
run / library release	0s
run / s3 archive release	0s
run / notify release	0s
	1m 55s

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