Merge pull request #1602 from milaboratory/fix-local-preset-on-windows

update version and test
milaboratory · Mar 27, 2024 · e9e7513 · e9e7513
2 parents 8d4077d + e8fed3e
commit e9e7513
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diff --git a/build.gradle.kts b/build.gradle.kts
@@ -134,7 +134,7 @@ val toObfuscate: Configuration by configurations.creating {
 val obfuscationLibs: Configuration by configurations.creating
 
 
-val mixcrAlgoVersion = "4.6.0-85-fix-preset-export"
+val mixcrAlgoVersion = "4.6.0-87-fix-local-preset-on-windows"
 // may be blank (will be inherited from mixcr-algo)
 val milibVersion = ""
 // may be blank (will be inherited from mixcr-algo or milib)

diff --git a/itests/case_localPreset.sh b/itests/case_localPreset.sh
@@ -0,0 +1,17 @@
+#!/usr/bin/env bash
+
+set -euxo pipefail
+
+mixcr exportPreset --preset-name generic-amplicon \
+  --species hs \
+  --rna \
+  --floating-left-alignment-boundary \
+  --floating-right-alignment-boundary J \
+  --add-step assembleContigs \
+  preset.yaml
+
+mixcr analyze --verbose local:preset test_R1.fastq test_R2.fastq with_dot
+[[ -f with_dot.clna ]] || exit 1
+
+mixcr analyze local#preset test_R1.fastq test_R2.fastq with_sharp
+[[ -f with_sharp.clna ]] || exit 1