Merge pull request #557 from monarch-initiative/fixingmaxolyxer

Quick fix of IRI
monarch-initiative · May 2, 2023 · a4bece2 · a4bece2
2 parents fd451c0 + 53c6097
commit a4bece2
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Showing 19 changed files with 21,149 additions and 14,881 deletions.
diff --git a/maxo-base.json b/maxo-base.json
@@ -25,9 +25,9 @@
         "val" : "https://creativecommons.org/licenses/by/4.0/"
       }, {
         "pred" : "http://www.w3.org/2002/07/owl#versionInfo",
-        "val" : "2023-04-18"
+        "val" : "2023-05-02"
       } ],
-      "version" : "http://purl.obolibrary.org/obo/maxo/releases/2023-04-18/maxo-base.json"
+      "version" : "http://purl.obolibrary.org/obo/maxo/releases/2023-05-02/maxo-base.json"
     },
     "nodes" : [ {
       "id" : "http://purl.obolibrary.org/obo/MAXO_0000001",
@@ -45446,6 +45446,15 @@
           "val" : "A type of cardiac test in which the patient walks on a treadmill or rides a stationary bike, while cardiovascular parameters such as heart rhythm, blood pressure and breathing are measured."
         }
       }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/MAXO_0035118",
+      "lbl" : "cardiac catheterization",
+      "type" : "CLASS",
+      "meta" : {
+        "definition" : {
+          "val" : "A procedure in which a catheter (thin hollow tube) is threaded into the heart via a large blood vessel, generally with contrast dye being injected through the catheter to visualize the heart chambers and coronary arteries."
+        }
+      }
     }, {
       "id" : "http://purl.obolibrary.org/obo/MAXO_0035119",
       "lbl" : "duplex ultrasound with color flow imaging",
@@ -45491,15 +45500,6 @@
           "val" : "A noninvasive imaging method that uses reflected light to create pictures of the back of your eye."
         }
       }
-    }, {
-      "id" : "http://purl.obolibrary.org/obo/MAXO_0035118%20",
-      "lbl" : "cardiac catheterization",
-      "type" : "CLASS",
-      "meta" : {
-        "definition" : {
-          "val" : "A procedure in which a catheter (thin hollow tube) is threaded into the heart via a large blood vessel, generally with contrast dye being injected through the catheter to visualize the heart chambers and coronary arteries."
-        }
-      }
     }, {
       "id" : "http://purl.obolibrary.org/obo/maxo#ABBREVIATION",
       "lbl" : "abbreviation",
@@ -50709,6 +50709,10 @@
       "sub" : "http://purl.obolibrary.org/obo/MAXO_0035117",
       "pred" : "is_a",
       "obj" : "http://purl.obolibrary.org/obo/MAXO_0000487"
+    }, {
+      "sub" : "http://purl.obolibrary.org/obo/MAXO_0035118",
+      "pred" : "is_a",
+      "obj" : "http://purl.obolibrary.org/obo/MAXO_0009033"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/MAXO_0035119",
       "pred" : "is_a",
@@ -50729,10 +50733,6 @@
       "sub" : "http://purl.obolibrary.org/obo/MAXO_0035016%20",
       "pred" : "is_a",
       "obj" : "http://purl.obolibrary.org/obo/MAXO_0001155"
-    }, {
-      "sub" : "http://purl.obolibrary.org/obo/MAXO_0035118%20",
-      "pred" : "is_a",
-      "obj" : "http://purl.obolibrary.org/obo/MAXO_0009033"
     } ],
     "logicalDefinitionAxioms" : [ {
       "definedClassId" : "http://purl.obolibrary.org/obo/MAXO_0000007",

diff --git a/maxo-base.obo b/maxo-base.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: maxo/releases/2023-04-18/maxo-base.owl
+data-version: maxo/releases/2023-05-02/maxo-base.owl
 ontology: maxo/maxo-base
 property_value: http://purl.org/dc/elements/1.1/creator "Leigh Carmody" xsd:string
 property_value: http://purl.org/dc/elements/1.1/creator "Peter Robinson" xsd:string
@@ -8,7 +8,7 @@ property_value: http://purl.org/dc/elements/1.1/title "Medical Action Ontology"
 property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/
 property_value: IAO:0000700 MAXO:0000001
-property_value: owl:versionInfo "2023-04-18" xsd:string
+property_value: owl:versionInfo "2023-05-02" xsd:string
 
 [Term]
 id: MAXO:0000001
@@ -19184,7 +19184,7 @@ def: "A type of cardiac test in which the patient walks on a treadmill or rides
 is_a: MAXO:0000487 ! clinical assessment
 
 [Term]
-id: MAXO:0035118 
+id: MAXO:0035118
 name: cardiac catheterization
 def: "A procedure in which a catheter (thin hollow tube) is threaded into the heart via a large blood vessel, generally with contrast dye being injected through the catheter to visualize the heart chambers and coronary arteries." []
 is_a: MAXO:0009033 ! cardiac device implantation

diff --git a/maxo-base.owl b/maxo-base.owl
@@ -12,15 +12,15 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/maxo/maxo-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/maxo/releases/2023-04-18/maxo-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/maxo/releases/2023-05-02/maxo-base.owl"/>
         <obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/MAXO_0000001"/>
         <dc:creator>Leigh Carmody</dc:creator>
         <dc:creator>Peter Robinson</dc:creator>
         <dc:description>An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations.</dc:description>
         <dc:title>Medical Action Ontology</dc:title>
         <dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
         <terms:license rdf:resource="https://creativecommons.org/licenses/by/4.0/"/>
-        <owl:versionInfo>2023-04-18</owl:versionInfo>
+        <owl:versionInfo>2023-05-02</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -45330,6 +45330,16 @@ High-carbohydrate (45% or greater)</owl:annotatedTarget>
 
 
 
+    <!-- http://purl.obolibrary.org/obo/MAXO_0035118 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MAXO_0035118">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MAXO_0009033"/>
+        <obo:IAO_0000115>A procedure in which a catheter (thin hollow tube) is threaded into the heart via a large blood vessel, generally with contrast dye being injected through the catheter to visualize the heart chambers and coronary arteries.</obo:IAO_0000115>
+        <rdfs:label>cardiac catheterization</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/MAXO_0035119 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MAXO_0035119">
@@ -46961,16 +46971,6 @@ High-carbohydrate (45% or greater)</owl:annotatedTarget>
         <obo:IAO_0000115>A noninvasive imaging method that uses reflected light to create pictures of the back of your eye.</obo:IAO_0000115>
         <rdfs:label>optical coherence tomography</rdfs:label>
     </owl:Class>
-
-
-
-    <!-- http://purl.obolibrary.org/obo/MAXO_0035118  -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MAXO_0035118 ">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MAXO_0009033"/>
-        <obo:IAO_0000115>A procedure in which a catheter (thin hollow tube) is threaded into the heart via a large blood vessel, generally with contrast dye being injected through the catheter to visualize the heart chambers and coronary arteries.</obo:IAO_0000115>
-        <rdfs:label>cardiac catheterization</rdfs:label>
-    </owl:Class>
 </rdf:RDF>