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Add 2402 data release #245

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Feb 29, 2024
Merged

Add 2402 data release #245

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2f8f630
Add data release `2402`
ielis Feb 26, 2024
21d34b9
Bump version to `1.1.0-SNAPSHOT` to indicate upcoming release.
ielis Feb 26, 2024
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4 changes: 2 additions & 2 deletions docs/conf.py
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Expand Up @@ -54,9 +54,9 @@
# built documents.
#
# The short X.Y version.
version = u'1.0'
version = u'1.1'
# The full version, including alpha/beta/rc tags.
release = u'1.0.4'
release = u'1.1.0-SNAPSHOT'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
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19 changes: 13 additions & 6 deletions docs/downloads.rst
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Expand Up @@ -6,12 +6,19 @@ Downloads

SvAnna database files are available for download from the following locations:

========= ============== ============================================================ =============================================
Version Genome build URL Size
========= ============== ============================================================ =============================================
2204 hg38/GRCh38 https://storage.googleapis.com/svanna/2204_hg38.svanna.zip ~627 MB for download, ~2.3 GB unpacked
2304 hg38/GRCh38 https://storage.googleapis.com/svanna/2304_hg38.svanna.zip ~674 MB for download, ~2.6 GB unpacked
========= ============== ============================================================ =============================================
========= ================ ============== ============================================================ =============================================
Version Compatibility Genome build URL Size
========= ================ ============== ============================================================ =============================================
2204 [1.0.0, 1.0.3) hg38/GRCh38 https://storage.googleapis.com/svanna/2204_hg38.svanna.zip ~627 MB for download, ~2.3 GB unpacked
2304 [1.0.3, 1.1.0) hg38/GRCh38 https://storage.googleapis.com/svanna/2304_hg38.svanna.zip ~674 MB for download, ~2.6 GB unpacked
2402 [1.1.0, latest) hg38/GRCh38 https://storage.googleapis.com/svanna/2402_hg38.svanna.zip ~648 MB for download, ~2.1 GB unpacked
========= ================ ============== ============================================================ =============================================

.. note::

The *Compatibility* column indicates the SvAnna application version that is compatible
with given database files *Version*. The bracket `[` is inclusive while `)` is exclusive.
For instance version `2304` works with SvAnna versions `1.0.3` and `1.0.4` but *not* with `1.1.0`.

Use ``curl`` or ``wget`` utilities to download the files from command line::

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2 changes: 1 addition & 1 deletion pom.xml
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Expand Up @@ -16,7 +16,7 @@
<module>svanna-benchmark</module>
</modules>
<groupId>org.monarchinitiative.svanna</groupId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.0-SNAPSHOT</version>
<name>SvAnna</name>

<parent>
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2 changes: 1 addition & 1 deletion svanna-benchmark/pom.xml
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Expand Up @@ -3,7 +3,7 @@
<parent>
<artifactId>SvAnna</artifactId>
<groupId>org.monarchinitiative.svanna</groupId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.0-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>

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2 changes: 1 addition & 1 deletion svanna-cli/pom.xml
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Expand Up @@ -3,7 +3,7 @@
<parent>
<artifactId>SvAnna</artifactId>
<groupId>org.monarchinitiative.svanna</groupId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.0-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>
<artifactId>svanna-cli</artifactId>
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2 changes: 1 addition & 1 deletion svanna-cli/src/main/java/org/monarchinitiative/svanna/cli/Main.java
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Expand Up @@ -17,7 +17,7 @@
footer = Main.FOOTER)
public class Main implements Callable<Integer> {

public static final String VERSION = "svanna-cli v1.0.5-SNAPSHOT";
public static final String VERSION = "svanna-cli v1.1.0-SNAPSHOT";

public static final int WIDTH = 120;

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2 changes: 1 addition & 1 deletion svanna-configuration/pom.xml
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Expand Up @@ -3,7 +3,7 @@
<parent>
<artifactId>SvAnna</artifactId>
<groupId>org.monarchinitiative.svanna</groupId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.0-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>

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2 changes: 1 addition & 1 deletion svanna-core/pom.xml
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Expand Up @@ -3,7 +3,7 @@
<parent>
<artifactId>SvAnna</artifactId>
<groupId>org.monarchinitiative.svanna</groupId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.0-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>

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2 changes: 1 addition & 1 deletion svanna-db/pom.xml
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Expand Up @@ -3,7 +3,7 @@
<parent>
<artifactId>SvAnna</artifactId>
<groupId>org.monarchinitiative.svanna</groupId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.0-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>

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2 changes: 1 addition & 1 deletion svanna-ingest/pom.xml
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Expand Up @@ -3,7 +3,7 @@
<parent>
<artifactId>SvAnna</artifactId>
<groupId>org.monarchinitiative.svanna</groupId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.0-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>
<artifactId>svanna-ingest</artifactId>
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2 changes: 1 addition & 1 deletion svanna-io/pom.xml
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Expand Up @@ -3,7 +3,7 @@
<parent>
<artifactId>SvAnna</artifactId>
<groupId>org.monarchinitiative.svanna</groupId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.0-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>

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2 changes: 1 addition & 1 deletion svanna-model/pom.xml
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Expand Up @@ -3,7 +3,7 @@
<parent>
<artifactId>SvAnna</artifactId>
<groupId>org.monarchinitiative.svanna</groupId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.0-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>

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2 changes: 1 addition & 1 deletion svanna-test/pom.xml
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Expand Up @@ -3,7 +3,7 @@
<parent>
<artifactId>SvAnna</artifactId>
<groupId>org.monarchinitiative.svanna</groupId>
<version>1.0.5-SNAPSHOT</version>
<version>1.1.0-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>

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