DO NOT MERGE: Synonym sync: acronym case exception - build

[joeflack4]

Build for:

• Synonym sync: acronym case exception #671

Maybe this build isn't entirely necessary, given the simple changes of #671. But we are about done with this round of synonym sync and about to merge it, and it needs a build first. But this feature branch is still open, so I ought to build here instead.
We do however have some synonym-related OMIM changes (monarch-initiative/omim#132) still yet to be merged. Not sure if we need to run a build on #93 when those changes are merged.

[joeflack4]

General review

Overall build LGTM!

New synonym sync outputs were ran recently before this build and are in the Google sheet. Those same outputs look good in this build.

Build stats
Build time was unusually high. About 7 hours. I haven't yet analyzed why that might be the case, though. I did notice that it seemed to be stuck on the synonym sync for Ordo for a bit, but IDK why that'd be the case. Normally the synonym sync Python scripts take about 45 seconds to complete for all sources. I might want to re-run part of / whole pipeline to sanity check performance. I wonder if my mac went to sleep at some point, though it shouldn't when it's plugged in.

[twhetzel]

@joeflack4 did you check back to see why this run took ~7 hr?

[joeflack4]

@twhetzel Until now, nothing beyond this initial comment.

I did just run the synonym sync Python part for Orphanet just now, since that is the part I noticed that for some reason appeared to be stuck a long time, and it completed within 11 seconds.

I would mark this as a strange anomaly. The only other reason I can think of why it might have taken a long time is possibly due to multiple updates to mondo master as this was running. Each time that happens, it can add another ~20-30 minutes to the build time, as it will generate another mondo.owl and mondo.sssom.tsv.

[twhetzel]

looks good - just one comment inline