Add build_browser_hub #15
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: GAMBLR.utils build check | |
on: | |
pull_request: | |
branches: [master] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -el {0} | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
R_KEEP_PKG_SOURCE: yes | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v3 | |
- name: Setup Conda | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.11 | |
- name: Create conda environment | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
activate-environment: r | |
channels: conda-forge,defaults | |
python-version: 3.11 | |
auto-activate-base: false | |
environment-file: envs/r.yaml | |
- name: Build package | |
run: | |
Rscript -e "devtools::install(repos = BiocManager::repositories())" | |
- name: Check package | |
run: | |
Rscript -e "devtools::check(vignettes = FALSE, args = '--no-examples')" | |
- name: Upload check results | |
if: failure() | |
uses: actions/upload-artifact@main | |
with: | |
name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
path: check |