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Dana Elizabeth Wyman committed Sep 24, 2019
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198 changes: 198 additions & 0 deletions example_files/GM12878_chr1.sam
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@HD VN:1.4
@SQ SN:chr1 LN:248956422
@SQ SN:chr2 LN:242193529
@SQ SN:chr3 LN:198295559
@SQ SN:chr4 LN:190214555
@SQ SN:chr5 LN:181538259
@SQ SN:chr6 LN:170805979
@SQ SN:chr7 LN:159345973
@SQ SN:chr8 LN:145138636
@SQ SN:chr9 LN:138394717
@SQ SN:chr10 LN:133797422
@SQ SN:chr11 LN:135086622
@SQ SN:chr12 LN:133275309
@SQ SN:chr13 LN:114364328
@SQ SN:chr14 LN:107043718
@SQ SN:chr15 LN:101991189
@SQ SN:chr16 LN:90338345
@SQ SN:chr17 LN:83257441
@SQ SN:chr18 LN:80373285
@SQ SN:chr19 LN:58617616
@SQ SN:chr20 LN:64444167
@SQ SN:chr21 LN:46709983
@SQ SN:chr22 LN:50818468
@SQ SN:chrX LN:156040895
@SQ SN:chrY LN:57227415
@SQ SN:chrM LN:16569
@SQ SN:chr1_KI270706v1_random LN:175055
@SQ SN:chr1_KI270707v1_random LN:32032
@SQ SN:chr1_KI270708v1_random LN:127682
@SQ SN:chr1_KI270709v1_random LN:66860
@SQ SN:chr1_KI270710v1_random LN:40176
@SQ SN:chr1_KI270711v1_random LN:42210
@SQ SN:chr1_KI270712v1_random LN:176043
@SQ SN:chr1_KI270713v1_random LN:40745
@SQ SN:chr1_KI270714v1_random LN:41717
@SQ SN:chr2_KI270715v1_random LN:161471
@SQ SN:chr2_KI270716v1_random LN:153799
@SQ SN:chr3_GL000221v1_random LN:155397
@SQ SN:chr4_GL000008v2_random LN:209709
@SQ SN:chr5_GL000208v1_random LN:92689
@SQ SN:chr9_KI270717v1_random LN:40062
@SQ SN:chr9_KI270718v1_random LN:38054
@SQ SN:chr9_KI270719v1_random LN:176845
@SQ SN:chr9_KI270720v1_random LN:39050
@SQ SN:chr11_KI270721v1_random LN:100316
@SQ SN:chr14_GL000009v2_random LN:201709
@SQ SN:chr14_GL000225v1_random LN:211173
@SQ SN:chr14_KI270722v1_random LN:194050
@SQ SN:chr14_GL000194v1_random LN:191469
@SQ SN:chr14_KI270723v1_random LN:38115
@SQ SN:chr14_KI270724v1_random LN:39555
@SQ SN:chr14_KI270725v1_random LN:172810
@SQ SN:chr14_KI270726v1_random LN:43739
@SQ SN:chr15_KI270727v1_random LN:448248
@SQ SN:chr16_KI270728v1_random LN:1872759
@SQ SN:chr17_GL000205v2_random LN:185591
@SQ SN:chr17_KI270729v1_random LN:280839
@SQ SN:chr17_KI270730v1_random LN:112551
@SQ SN:chr22_KI270731v1_random LN:150754
@SQ SN:chr22_KI270732v1_random LN:41543
@SQ SN:chr22_KI270733v1_random LN:179772
@SQ SN:chr22_KI270734v1_random LN:165050
@SQ SN:chr22_KI270735v1_random LN:42811
@SQ SN:chr22_KI270736v1_random LN:181920
@SQ SN:chr22_KI270737v1_random LN:103838
@SQ SN:chr22_KI270738v1_random LN:99375
@SQ SN:chr22_KI270739v1_random LN:73985
@SQ SN:chrY_KI270740v1_random LN:37240
@SQ SN:chrUn_KI270302v1 LN:2274
@SQ SN:chrUn_KI270304v1 LN:2165
@SQ SN:chrUn_KI270303v1 LN:1942
@SQ SN:chrUn_KI270305v1 LN:1472
@SQ SN:chrUn_KI270322v1 LN:21476
@SQ SN:chrUn_KI270320v1 LN:4416
@SQ SN:chrUn_KI270310v1 LN:1201
@SQ SN:chrUn_KI270316v1 LN:1444
@SQ SN:chrUn_KI270315v1 LN:2276
@SQ SN:chrUn_KI270312v1 LN:998
@SQ SN:chrUn_KI270311v1 LN:12399
@SQ SN:chrUn_KI270317v1 LN:37690
@SQ SN:chrUn_KI270412v1 LN:1179
@SQ SN:chrUn_KI270411v1 LN:2646
@SQ SN:chrUn_KI270414v1 LN:2489
@SQ SN:chrUn_KI270419v1 LN:1029
@SQ SN:chrUn_KI270418v1 LN:2145
@SQ SN:chrUn_KI270420v1 LN:2321
@SQ SN:chrUn_KI270424v1 LN:2140
@SQ SN:chrUn_KI270417v1 LN:2043
@SQ SN:chrUn_KI270422v1 LN:1445
@SQ SN:chrUn_KI270423v1 LN:981
@SQ SN:chrUn_KI270425v1 LN:1884
@SQ SN:chrUn_KI270429v1 LN:1361
@SQ SN:chrUn_KI270442v1 LN:392061
@SQ SN:chrUn_KI270466v1 LN:1233
@SQ SN:chrUn_KI270465v1 LN:1774
@SQ SN:chrUn_KI270467v1 LN:3920
@SQ SN:chrUn_KI270435v1 LN:92983
@SQ SN:chrUn_KI270438v1 LN:112505
@SQ SN:chrUn_KI270468v1 LN:4055
@SQ SN:chrUn_KI270510v1 LN:2415
@SQ SN:chrUn_KI270509v1 LN:2318
@SQ SN:chrUn_KI270518v1 LN:2186
@SQ SN:chrUn_KI270508v1 LN:1951
@SQ SN:chrUn_KI270516v1 LN:1300
@SQ SN:chrUn_KI270512v1 LN:22689
@SQ SN:chrUn_KI270519v1 LN:138126
@SQ SN:chrUn_KI270522v1 LN:5674
@SQ SN:chrUn_KI270511v1 LN:8127
@SQ SN:chrUn_KI270515v1 LN:6361
@SQ SN:chrUn_KI270507v1 LN:5353
@SQ SN:chrUn_KI270517v1 LN:3253
@SQ SN:chrUn_KI270529v1 LN:1899
@SQ SN:chrUn_KI270528v1 LN:2983
@SQ SN:chrUn_KI270530v1 LN:2168
@SQ SN:chrUn_KI270539v1 LN:993
@SQ SN:chrUn_KI270538v1 LN:91309
@SQ SN:chrUn_KI270544v1 LN:1202
@SQ SN:chrUn_KI270548v1 LN:1599
@SQ SN:chrUn_KI270583v1 LN:1400
@SQ SN:chrUn_KI270587v1 LN:2969
@SQ SN:chrUn_KI270580v1 LN:1553
@SQ SN:chrUn_KI270581v1 LN:7046
@SQ SN:chrUn_KI270579v1 LN:31033
@SQ SN:chrUn_KI270589v1 LN:44474
@SQ SN:chrUn_KI270590v1 LN:4685
@SQ SN:chrUn_KI270584v1 LN:4513
@SQ SN:chrUn_KI270582v1 LN:6504
@SQ SN:chrUn_KI270588v1 LN:6158
@SQ SN:chrUn_KI270593v1 LN:3041
@SQ SN:chrUn_KI270591v1 LN:5796
@SQ SN:chrUn_KI270330v1 LN:1652
@SQ SN:chrUn_KI270329v1 LN:1040
@SQ SN:chrUn_KI270334v1 LN:1368
@SQ SN:chrUn_KI270333v1 LN:2699
@SQ SN:chrUn_KI270335v1 LN:1048
@SQ SN:chrUn_KI270338v1 LN:1428
@SQ SN:chrUn_KI270340v1 LN:1428
@SQ SN:chrUn_KI270336v1 LN:1026
@SQ SN:chrUn_KI270337v1 LN:1121
@SQ SN:chrUn_KI270363v1 LN:1803
@SQ SN:chrUn_KI270364v1 LN:2855
@SQ SN:chrUn_KI270362v1 LN:3530
@SQ SN:chrUn_KI270366v1 LN:8320
@SQ SN:chrUn_KI270378v1 LN:1048
@SQ SN:chrUn_KI270379v1 LN:1045
@SQ SN:chrUn_KI270389v1 LN:1298
@SQ SN:chrUn_KI270390v1 LN:2387
@SQ SN:chrUn_KI270387v1 LN:1537
@SQ SN:chrUn_KI270395v1 LN:1143
@SQ SN:chrUn_KI270396v1 LN:1880
@SQ SN:chrUn_KI270388v1 LN:1216
@SQ SN:chrUn_KI270394v1 LN:970
@SQ SN:chrUn_KI270386v1 LN:1788
@SQ SN:chrUn_KI270391v1 LN:1484
@SQ SN:chrUn_KI270383v1 LN:1750
@SQ SN:chrUn_KI270393v1 LN:1308
@SQ SN:chrUn_KI270384v1 LN:1658
@SQ SN:chrUn_KI270392v1 LN:971
@SQ SN:chrUn_KI270381v1 LN:1930
@SQ SN:chrUn_KI270385v1 LN:990
@SQ SN:chrUn_KI270382v1 LN:4215
@SQ SN:chrUn_KI270376v1 LN:1136
@SQ SN:chrUn_KI270374v1 LN:2656
@SQ SN:chrUn_KI270372v1 LN:1650
@SQ SN:chrUn_KI270373v1 LN:1451
@SQ SN:chrUn_KI270375v1 LN:2378
@SQ SN:chrUn_KI270371v1 LN:2805
@SQ SN:chrUn_KI270448v1 LN:7992
@SQ SN:chrUn_KI270521v1 LN:7642
@SQ SN:chrUn_GL000195v1 LN:182896
@SQ SN:chrUn_GL000219v1 LN:179198
@SQ SN:chrUn_GL000220v1 LN:161802
@SQ SN:chrUn_GL000224v1 LN:179693
@SQ SN:chrUn_KI270741v1 LN:157432
@SQ SN:chrUn_GL000226v1 LN:15008
@SQ SN:chrUn_GL000213v1 LN:164239
@SQ SN:chrUn_KI270743v1 LN:210658
@SQ SN:chrUn_KI270744v1 LN:168472
@SQ SN:chrUn_KI270745v1 LN:41891
@SQ SN:chrUn_KI270746v1 LN:66486
@SQ SN:chrUn_KI270747v1 LN:198735
@SQ SN:chrUn_KI270748v1 LN:93321
@SQ SN:chrUn_KI270749v1 LN:158759
@SQ SN:chrUn_KI270750v1 LN:148850
@SQ SN:chrUn_KI270751v1 LN:150742
@SQ SN:chrUn_KI270752v1 LN:27745
@SQ SN:chrUn_KI270753v1 LN:62944
@SQ SN:chrUn_KI270754v1 LN:40191
@SQ SN:chrUn_KI270755v1 LN:36723
@SQ SN:chrUn_KI270756v1 LN:79590
@SQ SN:chrUn_KI270757v1 LN:71251
@SQ SN:chrUn_GL000214v1 LN:137718
@SQ SN:chrUn_KI270742v1 LN:186739
@SQ SN:chrUn_GL000216v2 LN:176608
@SQ SN:chrUn_GL000218v1 LN:161147
@SQ SN:chrEBV LN:171823
@PG ID:STAR PN:STAR VN:STAR_2.5.2a CL:STARlong --runThreadN 4 --genomeDir /bio/dwyman/pacbio_f2016/data/STAR_hg38_ENCODE --readFilesIn /bio/dwyman/pacbio_f2016/GM12878/rep3/pbtCluster/pbtCluster_out/PB14/all_quivered_hq.100_30_0.99.fasta --readNameSeparator space --outFileNamePrefix /bio/dwyman/pacbio_f2016/GM12878/rep3/STAR/STAR_out/PB14/ --outSAMtype SAM --outSAMattributes NH HI NM MD jM jI --outFilterMultimapScoreRange 1 --outFilterMismatchNmax 2000 --scoreGapNoncan -20 --scoreGapGCAG -4 --scoreGapATAC -8 --scoreDelBase -1 --scoreDelOpen -1 --scoreInsOpen -1 --scoreInsBase -1 --seedSearchStartLmax 50 --seedPerReadNmax 100000 --seedPerWindowNmax 1000 --alignTranscriptsPerReadNmax 100000 --alignTranscriptsPerWindowNmax 10000 --alignEndsType Local --sjdbGTFfile /bio/dwyman/pacbio_f2016/data/GENCODEv24/gencode.v24.annotation.gtf
@CO user command line: STARlong --runThreadN 4 --genomeDir /bio/dwyman/pacbio_f2016/data/STAR_hg38_ENCODE --readFilesIn /bio/dwyman/pacbio_f2016/GM12878/rep3/pbtCluster/pbtCluster_out/PB14/all_quivered_hq.100_30_0.99.fasta --sjdbGTFfile /bio/dwyman/pacbio_f2016/data/GENCODEv24/gencode.v24.annotation.gtf --outFileNamePrefix /bio/dwyman/pacbio_f2016/GM12878/rep3/STAR/STAR_out/PB14/ --outSAMattributes NH HI NM MD jM jI --readNameSeparator space --outFilterMultimapScoreRange 1 --outFilterMismatchNmax 2000 --scoreGapNoncan -20 --scoreGapGCAG -4 --scoreGapATAC -8 --scoreDelOpen -1 --scoreDelBase -1 --scoreInsOpen -1 --scoreInsBase -1 --alignEndsType Local --seedSearchStartLmax 50 --seedPerReadNmax 100000 --seedPerWindowNmax 1000 --alignTranscriptsPerReadNmax 100000 --alignTranscriptsPerWindowNmax 10000 --outSAMtype SAM
c33255/f1p0/3238 0 chr1 827670 255 7S106M1227N102M18549N153M1677N119M2324N184M560N96M624N34M49N898M1D66M1D556M1D125M1327N240M1D479M1D73M * 0 0 TTTCTGGCCTGCCAGTGTCTCCGCCGGTTGAAAGCGCGTGTCTGCGTCGGGTTCTGTTGGAGTGCGTTCGGTGCGCCGTGGGTCCGCGCTGCTTCCACCCAACTTCCTGTTAGTTTCTCTCCTGTCACAATGGCATGATCTCGGCTCACTGCGACCTCTGCTTCCTGGGTTCAAGGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGTTTCCATCATTATCTTCTATGGAGTTCTTCATTCCCACATCTGTGGACCTTAAAATCCTACCGTTGAGTGCCTGCCTTGGATCAGCAGTCAGTTCGTTACCTTGGTTCTCAGACGATGCTTGCAACAACGCCATGCGATTCGCCCACTCTTGGAGAAAATAAGAGAAGTATCCCTGAAGGATGAAATATCCTCGAATATGAAAAGGTCTGCTCTCTGAAGACCAACTGTCTCAGTCTGCTTTTTGCTGCTGTAACAGAATACCACAGACTTGGTTACATTAGTTATACACTCTGGAGGTGACTTGACCTGTCATTGTGAACAATTATTGCTCTTGGACGACCCAGGACATAGGCCAGCCAGTACTTACCCCAGTGTGTTGGAGAATCGCGCTTGGCTTCTTCCTCTGTGCTGAGTCATGAAAGTTGCCGGAGCAGGTGCAGTTACACAACCTCCAGGTATGATCCTGTTTAAGGACTGGATTTAGGATAACTACTTAGAGGTTAAAAGTCACAAGGGTGTATGGATGAGGCTGGAGTGATCTGGGACCAAAGACATCTAGGCTTGCTGTCAAGGCTTCTGATCAACATGAGATGACCGCCGTGTGGTAAACTGATGAACCCCGACGCTGATCAACATGAGATGACCGCCGTGTGGTAAACTGATGAACCCTGACCCTGATCAACATGAGATGACCGCCGTGTGGTAAACTGATGAACCCCGACCCTGATGAACGTGAGATGACCGCCGTGTGGTAAACTGATGAACCCCGACCCTCATGAACATGAGATGACCGCCGTGTGGTAAACTGATGAACCCCGACCCTGATCAACATGAGATGACCGCCGTGTGGTAAACTGATGAACCCCGACCCTGATGAACATGAGATGACCGCCGTGTGGTAAACTGATGAACCCCGACCCTGATCAACATGAGATGACCGCCGTGTGGTAAACTGATGAACCCCGACCCTGATCAACATGAGATGACCGCCGTGTGGTAAACTGATGAACCCTGACCCATTAGGCTTTGGCTACAGAATGTGGAAATAAGTTGTGTTACTACATGTGTGTAATCCTAGGGTGCAGGACACCGGCCGGGAGGTTCCATAGAGTGATGGGTTCTGCAGGTAACTCATCCTCTAGTCCTCTGTAAGCTCCTAGAAGGAAGAAATTATGTCCTTTAGACTAATAAAATTCCTCCAAACCAAATACAGCACCTACTGTGAAGACACAAAGATACTTTTAGAATAGTAAAAACTTTATCCATTGAGAAATTCCTTAATGAAACAGTATCCAAGAAGTCATTTGCCAGCAGATTTCTTAGAGGTGCGATAAAGAAGAGGACATTGCCAGTCGTCACAGCAGCTGCAATAGCTCCTCTCTATTGTTAAACAGTGGGATATCTTGTGCAGGTTTTCAGTTGACAATCAATTTTAAAGATTAGTTTCGGTCCCCATCAATCAATTATTTATTAACCCATCAATAAAATTTAAATGCTCTGTGAGGTACAATAGCTATTAAAAGAGACAGAGGCACTTTCTGTGTCCAGAGGGCTTTTAGTCTGCTCTGGAAAGCAAGATGCGTGCAGATGAGTGACGCAGTGCATCGTGTGGATGCAAAGGGAGGGACTCACATGGGAACCAGAGGAGCTACGAAGGGAGGCAGTGGGGACTGGTGGGTCGAGACCTGGAAATAACACATGAATAGGCAACAAAGGTTTCCTTTCCTCTTCCATGCACTTCAGTCCTTGAAAAACGTCTTACCACGGAATTCCACAGCGTACCAAGCGATTCCACAGCTTGATGGCACACTCTCCTTTCTCAGCATTCTTGAAAATGGCGTGTGAGCCAAGCCATCTTACTGAGAAATTACCTTAAACCATTTGATGAACCAAAAATATTTTGTAATACCCATCTCCGACATTAGGTAGGCAAATCACACAGAAACACCGAGGTCTTCTGAGTCATATTTATCTGAAAAATCACAGCTTGGGTGCATGTGAAGCCAGAGGAGCACTCCTGGGGCCTGCGGTGCCATCACTCAGCTCCCCTGGGCTTCACATGGCCATGGAGCACCCAGCAAGTGTAGGCTCTGAGCCTTCAGGGAGGGCGGCATCAGCCAGCACCATCGTCTCCTGGGTCTTGTGCCTCTTCCTTGGTTGCGGTGTTGTCAGGGCCAGAATTGGGCAATTCCGGGTGACATCCAGGTGTGGCTGCTGACACGGAGCACAGGACACCCTGCTCCTGTGGTTTGCAGCCCCGGCCTTCTCTTCGAGGACGCCTCTGCTCTTCTGCCTCACACTCGGATTGGACCTTCTTCAGCACAGCCAGTGGCCGAGGCTTCCTCCCTGGGGCTCAGTGGAGCAGGACAGATGCTGCATCCAAACTCTTCCATTGGGTTCCAGTCTGTTCCAGTCATGCCCTTGAGCCTCTAAAGCTCCTAGGTGAGAGACGTAGCAGCTGACAGCACTTCCACTTGATTTGGGTGGACTCCAGCCTCCCCAGCAACAATAAGAGATCAAAAGCATCGTTGAGGAAGCAGCTTGCTGAAACGCTGAGTGCCCGCCACTCTCAGGTCAGGTGGGACCGGCAGGCCAGCATGAGTTCCTGAACACTTGGTTCTCAATACTGGCCACAGCCACACTGTAAGGGGAAACAAGAGGGCGCTGTATGCAAACATCTCTTGAACTCTGGAGTCTGCTCACCTTCCTGCCTCAAGCCCCTCTCCCACGTGGTCCAGTCACCATTCTCCACAGAGACTACCCTAAAACCCAGCGACTCTCGTGTGCCTGCAGAATGGCACAGCCCGTTCTCATAGCAGCACTCCTGTTTAATCAGAGGGATGTTAACGACCAAGTCATATTTGCTCGATTTGTGTTCAATATATTTCATTTGTACCGATAAAACTTAAAAATATCCCCACACATGCATTGCCTATTAAAGAGTATCTTCAGGTACACCTCCCTTACACATCAGTTAACTTGATAATTTCTTCCCATTCTTGTGCAATAAATTTCCTTCCTG * NH:i:1 HI:i:1 NM:i:19 MD:Z:572G27C232C5G3G34C9G3G90G6G48G156T495^A66^G556^G365^C193A216C68^C73 jM:B:c,21,21,21,21,21,21,5,1 jI:B:i,827776,829002,829105,847653,847807,849483,849603,851926,852111,852670,852767,853390,853425,853473,855122,856448
c1417/f31p12/2759 16 chr1 944206 255 595M256N90M371N136M519N114M115N144M1585N102M257N114M2523N112M761N140M272N189M574N114M493N111M111N79M1840N91M81N121M678N132M73N175M1655N153M133N47M * 0 0 ACACAATGGCCCTGCCTCCCACCGCTTTATTTCTTTCGGTTTCGGATGCAAAACAAAAAATTTTAAAAGAAAATGTGACTTCAAAGGAAAAGAACAAATTTCCAAAGACTTGGGGGAGTGAAGGCAGAGCCTGGTGCAGATGGACGAGGTCTGCAGACGGAGGGCAGAGGTGGTGGAAGGGGCCAGGGGCCTGCAGGCCTCCCCCTGGAACTGGGACTGGTCTCGGTCTGCTGACGTCAGGGTCAGCTCCCCCGCGGAGCTGACTTCAGCAGCCCACAGCTGTGGGGCTTCAGCAGCCACACCAGCCCAGCCCAGCCCAGCTCTCGATACGTTTGGTCTTTCATGCTGAAAAATAAATAATAAAGCCTGTCCCGTGTCTACTGCCTCCCCCAACTGCACAGACGCCAGCCTCTAGGCCTGACTGCCAGGGAGGTGGAAACACTGGCCACCAGCCCGGCAGCCCCTACAGGCCCCCCAGATGGGCTGCCTCAGTCGTCCTCTGAGAGCTGCAGATCCTCCAGCTCGTCCTCCGGCCCCTGGGCCAGCTGCTGCAGCTCCCCAGGGGCCAGCCCCGCCTCTGCGTCTGGGTCTCCATCCTCCGAGTTGCTGCTGTCCTCCTCGCCCTCCTCCTCGTCCTCTTCATCGTCTTCCACCCCATGCCGAGTGCTCAGGGGCCTCAGTATCCCTCTCTCCGAGAATCCCTCGGTGTCGTCCTCTTCAGAGCTGTTCAGGTCAAAGAGGTCTTTAAATTGCTTCCTGTCCTCATCCTTCCTGTCAGCCATCTTCCTTCGTTTGATCTCAGGGAAGTTCAGGTCTTCCAGCCGCTCTTTGCCACTGATCTCCAGCTGGATCTCCCGGTCACGCAGCTTGCGCCAGTGGCTGTAGTACAAGGTCAAGGGTGTCCCCTCTTCCCGGGTCAGCTTCTCCCAGGCTTCCACTGCCTGCTGCTCAGAGACGCCGAAGGAAACCCTCTGGCGGCGGCTGCAGATGTATGCCGAGTTCTCCTGAACCTTCCCAAGCAGCTGCTGCACCTGCCGGCAGTAGTTGGCCACCTTGCACTCCCGGAGGAACGACTTCAGCTGCAGGACCACAGGCAGCACCAGCTCCGGGAAGCCGATGCAGTGTGCCTGGCTGTGCAGGTACTCCAGGGTGAGGTCGTACAGCTGCTCCACCAGGCCGTCCCGGTACGCCTTCTCCTGCAGGTTGACATGGGACAGCTTCAGGATCACGGAGAAGTTGATGGGCTTGGAGCTCATGCGCCCTGGCTTCCTGTTGAAGTCGACCTGCTGGAACATCTCCAGGATGAAAGGCAGCACCGGGATGAAGGCCCCCGAGCTCCCCGAGAGCAGCGTCAGGGCACGGATGCAGTGCATTCGCAGCGGGTAGAAGCGGGCAGTGGGGATGAGCTTGATACAGCCAATGATGACTTGGGCAAGGGGGTAGACCAAGGGCTGGAGGGCTTCGCTGGGGCCCGCAGTGCTCAGGACCCGGCACCACAGGAAGAGGCAGTGCACATACTGCCAGTTGTACACAGACTGGTATGTTTCCTTCTTGCGGGTGGTCATGGCGTTGCGCAGGTGTATGGCGAGCTGGCGGATGTAGAGGAAGGCGTGCTGGTAGGCCACACCCGGCTCCAGGGCCAGCAGCTCCGTCAAGGTCCACTGCATGAAACTGATGAAGGGGAGGGCACCAGGCGAGGTGAACTTGCAGTTCCTCACATACGTGATGTACATTTGCTTGAGGACGGGGCCAAGGAAAGTGTCCTTCTTGTGCCGGCAGACTCTGCTGAGGACCAGGAAAGCCAGCACCCGCAGAGACTCCTCCCCAGTGCTCCATACGACCACCATTCTCTTGAGCAGCATGCGGCACTGCTTGGGGAAGGTCAGGAAGCAGGGCACCAGCACGCTGATGTGCCGCAGCACGGCCGCCAACACCGTCGTCTCCGACAGACAGGACACCAGCTGTATGGCCGAGCCCAGGTAAGCCTTGATGTCCACACGAAGCTTCCCCCAGAGCGGGCTGCTGGACGGCTGCAGCATCCTGCTGCTATCCTTTGCCACCTTTCCAAACAGCAGCTTCTGGAGACAGCCAATGAGGTCTCTGATGCAGAAGGTAACCAGAGCATTGAATGCAGCACTGTCCGTGACCTGGAATTTGTTGGCCTCAGCACTTTCCTGGTCCCCTCGGGTGGTGGCCACAGCTGCTCGGAACGCCTGTACCACTTCATGGAACAGCTTTGGAGTGAGGCGTTGCTTTGCTGCCTGCTTCCATCTCTCAACCATGGCGACGGTCACAGGAACAGAATTCTTCTTCCCCTTCAGCCCTCTGGGGACTCTGTCCCCATCTTCTCCTTCCTCCGCTCCATCCTCCTCCTCACTGGCTTCCTCCAGCACATCTGGCAGGGAGTGGAACGGCCCCTCTTCCTCCTCAGAGCTGTCCGAGTCGCTGAAGTTTAGCAGGCTCTGGTCATTCTCCTGCAGGAACTTGTAGAACTCGGGGTCTCTGTCCTTCAGCCGAGAGAGCTGGTCTTTGTGCTCAGAGGCACGGCCTTTACGCCGGCTGGCCGAGGGGCTCCCGCCCGGCTTATCCGGACTCCGGGCAGCCTCGCGTGCTTCCCGTGTCTCCGCTTGTGGAGAATTTTCGGACTCGGATTCGGACTCGGAGTCAAAGCCCGAAGCTAGGAACTCGTCCACCGTCAGCTCCGCCAGGCGCCTCTTGCGGCTCCCCGCAGCTGCCATGACACCAACCCGAAGCGTGCA * NH:i:1 HI:i:1 NM:i:7 MD:Z:90G10T793G314T345A263T19T918 jM:B:c,22,22,22,22,22,22,22,22,22,22,22,22,22,22,22,22,22,22 jI:B:i,944801,945056,945147,945517,945654,946172,946287,946401,946546,948130,948233,948489,948604,951126,951239,951999,952140,952411,952601,953174,953289,953781,953893,954003,954083,955922,956014,956094,956216,956893,957026,957098,957274,958928,959082,959214
c3620/f1p4/2788 16 chr1 944206 255 595M241N105M371N136M519N114M115N144M1585N102M257N114M2523N112M761N140M272N189M574N114M493N111M111N79M1840N91M81N121M678N132M73N175M1655N153M133N61M * 0 0 ACACAATGGCCCTGCCTCCCACCGCTTTATTTCTTTCGGTTTCGGATGCAAAACAAAAAATTTTAAAAGAAAATGTGACTTCAAAGGAAAAGAACAAATTTCCAAAGACTTGGGGGAGTGAAGGCAGAGCCTGGTGCAGATGGACGAGGTCTGCAGACGGAGGGCAGAGGTGGTGGAAGGGGCCAGGGGCCTGCAGGCCTCCCCCTGGAACTGGGACTGGTCTCGGTCTGCTGACGTCAGGGTCAGCTCCCCCGCGGAGCTGACTTCAGCAGCCCACAGCTGTGGGGCTTCAGCAGCCACACCAGCCCAGCCCAGCCCAGCTCTCGATACGTTTGGTCTTTCATGCTGAAAAATAAATAATAAAGCCTGTCCCGTGTCTACTGCCTCCCCCAACTGCACAGACGCCAGCCTCTAGGCCTGACTGCCAGGGAGGTGGAAACACTGGCCACCAGCCCGGCAGCCCCTACAGGCCCCCCAGATGGGCTGCCTCAGTCGTCCTCTGAGAGCTGCAGATCCTCCAGCTCGTCCTCCGGCCCCTGGGCCAGCTGCTGCAGCTCCCCAGGGGCCAGCCCCGCCTCTGCGTCTGGGTCTCCATCCCAAGACCATTCACCCTCCGAGTTGCTGCTGTCCTCCTCGCCCTCCTCCTCGTCCTCTTCATCGTCTTCCACCCCATGCCGAGTGCTCAGGGGCCTCAGTATCCCTCTCTCCGAGAATCCCTCGGTGTCGTCCTCTTCAGAGCTGTTCAGGTCAAAGAGGTCTTTAAATTGCTTCCTGTCCTCATCCTTCCTGTCAGCCATCTTCCTTCGTTTGATCTCAGGGAAGTTCAGGTCTTCCAGCCGCTCTTTGCCACTGATCTCCAGCTGGATCTCCCGGTCACGCAGCTTGCGCCAGTGGCTGTAGTACAAGGTCAAGGGTGTCCCCTCTTCCCGGGTCAGCTTCTCCCAGGCTTCCACTGCCTGCTGCTCAGAGACGCCGAAGGAAACCCTCTGGCGGCGGCTGCAGATGTATGCCGAGTTCTCCTGAACCTTCCCAAGCAGCTGCTGCACCTGCCGGCAGTAGTTGGCCACCTTGCACTCCCGGAGGAACGACTTCAGCTGCAGGACCACAGGCAGCACCAGCTCCGGGAAGCCGATGCAGTGTGCCTGGCTGTGCAGGTACTCCAGGGTGAGGTCGTACAGCTGCTCCACCAGGCCGTCCCGGTACGCCTTCTCCTGCAGGTTGACATGGGACAGCTTCAGGATCACGGAGAAGTTGATGGGCTTGGAGCTCATGCGCCCTGGCTTCCTGTTGAAGTCGACCTGCTGGAACATCTCCAGGATGAAAGGCAGCACCGGGATGAAGGCCCCCGAGCTCCCCGAGAGCAGCGTCAGGGCACGGATGCAGTGCATTCGCAGCGGGTAGAAGCGGGCAGTGGGGATGAGCTTGATACAGCCAATGATGACTTGGGCAAGGGGGTAGACCAAGGGCTGGAGGGCTTCGCTGGGGCCCGCAGTGCTCAGGACCCGGCACCACAGGAAGAGGCAGTGCACATACTGCCAGTTGTACACAGACTGGTATGTTTCCTTCTTGCGGGTGGTCATGGCGTTGCGCAGGTGTATGGCGAGCTGGCGGATGTAGAGGAAGGCGTGCTGGTAGGCCACACCCGGCTCCAGGGCCAGCAGCTCCGTCAAGGTCCACTGCATGAAACTGATGAAGGGGAGGGCACCAGGCGAGGTGAACTTGCAGTTCCTCACATACGTGATGTACATTTGCTTGAGGACGGGGCCAAGGAAAGTGTCCTTCTTGTGCCGGCAGACTCTGCTGAGGACCAGGAAAGCCAGCACCCGCAGAGACTCCTCCCCAGTGCTCCATACGACCACCATTCTCTTGAGCAGCATGCGGCACTGCTTGGGGAAGGTCAGGAAGCAGGGCACCAGCACGCTGATGTGCCGCAGCACGGCCGCCAACACCGTCGTCTCCGACAGACAGGACACCAGCTGTATGGCCGAGCCCAGGTAAGCCTTGATGTCCACACGAAGCTTCCCCCAGAGCGGGCTGCTGGACGGCTGCAGCATCCTGCTGCTATCCTTTGCCACCTTTCCAAACAGCAGCTTCTGGAGACAGCCAATGAGGTCTCTGATGCAGAAGGTAACCAGAGCATTGAATGCAGCACTGTCCGTGACCTGGAATTTGTTGGCCTCAGCACTTTCCTGGTCCCCTCGGGTGGTGGCCACAGCTGCTCGGAACGCCTGTACCACTTCATGGAACAGCTTTGGAGTGAGGCGTTGCTTTGCTGCCTGCTTCCATCTCTCAACCATGGCGACGGTCACAGGAACAGAATTCTTCTTCCCCTTCAGCCCTCTGGGGACTCTGTCCCCATCTTCTCCTTCCTCCGCTCCATCCTCCTCCTCACTGGCTTCCTCCAGCACATCTGGCAGGGAGTGGAACGGCCCCTCTTCCTCCTCAGAGCTGTCCGAGTCGCTGAAGTTTAGCAGGCTCTGGTCATTCTCCTGCAGGAACTTGTAGAACTCGGGGTCTCTGTCCTTCAGCCGAGAGAGCTGGTCTTTGTGCTCAGAGGCACGGCCTTTACGCCGGCTGGCCGAGGGGCTCCCGCCCGGCTTATCCGGACTCCGGGCAGCCTCGCGTGCTTCCCGTGTCTCCGCTTGTGGAGAATTTTCGGACTCGGATTCGGACTCGGAGTCAAAGCCCGAAGCTAGGAACTCGTCCACCGTCAGCTCCGCCAGGCGCCTCTTGCGGCTCCCCGCAGCTGCCATGACACCAACCCGAAGCGTGCACCCCACTTCCGGCC * NH:i:1 HI:i:1 NM:i:7 MD:Z:90G10T808G314T345A263T19T932 jM:B:c,22,22,22,22,22,22,22,22,22,22,22,22,22,22,22,22,22,22 jI:B:i,944801,945041,945147,945517,945654,946172,946287,946401,946546,948130,948233,948489,948604,951126,951239,951999,952140,952411,952601,953174,953289,953781,953893,954003,954083,955922,956014,956094,956216,956893,957026,957098,957274,958928,959082,959214
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