Support protobuff for TEMPO-cBio pipeline JSON/data model

[ao508]

JSON schema to publish from smile-server to TEMPO-cBio pipeline
Note: we want to use protocol buffers generation

Proposed schema:

- primaryId
- cmoSampleName
- embargoStatus (needs to be resolved from embargo date)
- custodianInformation
- cohortId

This card can be considered done when the protobufs class and generated models are checked into smile-commons

https://github.com/mskcc/smile-commons

Current java version for protobufs (works with java21): protbufs 4.26.1

smile.proto

syntax = "proto3";
package smile;
option go_package = "github.com/mskcc/mskprotobuf/smile;smile";

message TempoSampleUpdateMessage {
  repeated TempoSample tempoSamples = 1;
}

message TempoSample {
  string primaryId = 1;
  string cmoSampleName = 2;
  bool embargoStatus = 3;
  string custodian = 4;
}

protoc path/to/smile.proto --java_out=[directory to write out to]

[ao508]

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