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74 Open 1,003 Closed
74 Open 1,003 Closed
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Issues list

Update documentation on the protobuf support + deployment steps.
#1381 opened Jan 27, 2025 by ao508
Dashboard not displaying validation reports bug Something isn't working
#1380 opened Jan 24, 2025 by ao508
Update script that resolves duplicate patients to handle more complex cases
#1379 opened Jan 23, 2025 by qu8n
Label generator: fix logic for nucleic acid counter when sample label is getting fixed/embedded with appropriate sample number DEPLOYED
#1378 opened Jan 22, 2025 by ao508
CMO Labels & ALT ID work Epic
#1377 opened Jan 22, 2025 by ao508
NATS config - consolidate and clean up pub/sub/consumers not in use NATS Server Administration
#1375 opened Jan 21, 2025 by ao508
3 tasks
Run assessment on how many CMO labels in SMILE are affected by the bad numbering (tumor count assignment)
#1373 opened Jan 9, 2025 by ao508
Adjust neo4j transactions to also rollback patient nodes created when a sample fails to import
#1372 opened Jan 9, 2025 by ao508
DB cleanup
#1371 opened Jan 9, 2025 by ao508
2 tasks done
1
Angelica - draft roadmap of SMILE 2025 goals
#1370 opened Jan 8, 2025 by ao508
Can we repurpose the comments field in sample metadata for logging changes made to data/labels. Dashboard Development
#1368 opened Jan 8, 2025 by ao508
Backfill alt id for all SMILE research samples external-dependencies MetaDB Server Development READY TO DEPLOY
#1358 opened Dec 19, 2024 by ao508
3 tasks done
1
[smile-server] monitor changes/updates to embargo status for tempo-cbio pipeline TEMPO-cBio Pipeline
#1354 opened Dec 18, 2024 by ao508
1
[smile-server] Publish (release) samples events for TEMPO-cBio pipeline TEMPO-cBio Pipeline
#1353 opened Dec 18, 2024 by ao508
1
Support protobuff for TEMPO-cBio pipeline JSON/data model TEMPO-cBio Pipeline
#1352 opened Dec 18, 2024 by ao508
1
Pub/Sub permissions for TEMPO-cBio pipeline TEMPO-cBio Pipeline
#1351 opened Dec 18, 2024 by ao508
1
TEMPO-cBio pipeline Epic TEMPO-cBio Pipeline
#1344 opened Dec 4, 2024 by ao508
Look into SMILE CRDB crosswalk table mappings discussion Bring issue up for discussion. external-dependencies
#1325 opened Nov 15, 2024 by ao508
Move 12-245 Part A/C consent status to patient-level metadata MetaDB Server Development
#1271 opened Sep 4, 2024 by ao508
1
Add new pub-sub topic for dbGap updates dbGaP NATS Server Administration
#1209 opened Jun 26, 2024 by ao508
1
Add message handler in SMILE server for incoming dbGap sample updates. dbGaP MetaDB Server Development
#1208 opened Jun 26, 2024 by ao508
Make dbGap info editable on SMILE dashboard (and push update to SMILE) Dashboard Development dbGaP
#1207 opened Jun 26, 2024 by ao508
Backfill existing dbGap sample data. dbGaP
#1206 opened Jun 26, 2024 by ao508
[dashboard] Export data from dbGap view into phenotype file format Dashboard Development dbGaP
#1205 opened Jun 26, 2024 by ao508
Display dbGap study in sample view and add dbGap tab Dashboard Development dbGaP
#1198 opened Jun 20, 2024 by ao508
ProTip! Adding no:label will show everything without a label.