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66 Open 1,045 Closed
66 Open 1,045 Closed
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Issues list

SMILE Server Development Epic
#1422 opened Feb 26, 2025 by ao508
Data Requests 2025 Epic
#1421 opened Feb 26, 2025 by ao508
Add Recapture and Patient ID [smile-server] TEMPO-cBio Pipeline
#1420 opened Feb 26, 2025 by ao508
2 tasks
1
Encode samples release message to cBioPortal in protobuf format instead of JSON string TEMPO-cBio Pipeline
#1419 opened Feb 25, 2025 by qu8n
Add Recapture and Patient ID to the TEMPO sample for cBio [protobuf + commons] TEMPO-cBio Pipeline
#1417 opened Feb 25, 2025 by qu8n
2 tasks
1
Request 16781_C: samples 16781_C_7 (maybe also 16781_C_9) need updates PM Request
#1416 opened Feb 25, 2025 by ao508
1
DigITs - reach out to upgrade production VM
#1415 opened Feb 25, 2025 by ao508
Resolve discrepancies between initial run dates and embargo dates of SMILE vs. those of Hera TEMPO-cBio Pipeline
#1414 opened Feb 24, 2025 by qu8n
1
Investigate normal samples with "T" in their label
#1413 opened Feb 24, 2025 by qu8n
1
cfDNA samples that need relabeling PM Request side-quest Extra work taken on that is not specifically an interrupt.
#1411 opened Feb 19, 2025 by ao508
cfDNA samples not being assigned correct sample type abbreviation [tweak logic] CMO ID Generation discussion Bring issue up for discussion. requires-unit-tests
#1407 opened Feb 14, 2025 by ao508
2
Update the TEMPO sample schema with new fields READY TO DEPLOY TEMPO-cBio Pipeline
#1405 opened Feb 13, 2025 by qu8n
1
[data] Find and report samples that are linked to more than one patient neo4j
#1402 opened Feb 11, 2025 by ao508
Create a Datadog alert when we reject sending a TEMPO sample to cBioPortal TEMPO-cBio Pipeline
#1399 opened Feb 7, 2025 by qu8n
Resolve samples found on cBioPortal but not on SMILE PM Request
#1397 opened Feb 6, 2025 by qu8n
SMILE dashboard to get TEMPO model data from database instead of calculating on the fly READY TO DEPLOY TEMPO-cBio Pipeline
#1387 opened Jan 29, 2025 by ao508
1
Tempo model updates READY TO DEPLOY TEMPO-cBio Pipeline
#1385 opened Jan 29, 2025 by ao508
1
Update script that resolves duplicate patients to handle more complex cases neo4j
#1379 opened Jan 23, 2025 by qu8n
Adjust neo4j transactions to also rollback patient nodes created when a sample fails to import SMILE Server Development
#1372 opened Jan 9, 2025 by ao508
1
Can we repurpose the comments field in sample metadata for logging changes made to data/labels. Dashboard Development
#1368 opened Jan 8, 2025 by ao508
[smile-server] monitor changes/updates to embargo date for tempo-cbio pipeline TEMPO-cBio Pipeline
#1354 opened Dec 18, 2024 by ao508
1
TEMPO-cBio pipeline Epic TEMPO-cBio Pipeline
#1344 opened Dec 4, 2024 by ao508
Look into SMILE CRDB crosswalk table mappings discussion Bring issue up for discussion. external-dependencies
#1325 opened Nov 15, 2024 by ao508
Move 12-245 Part A/C consent status to patient-level metadata neo4j SMILE Server Development
#1271 opened Sep 4, 2024 by ao508
1
Add new pub-sub topic for dbGap updates dbGaP NATS Server Administration
#1209 opened Jun 26, 2024 by ao508
1
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