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Backfill alt id for all SMILE research samples #1358

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3 tasks done
ao508 opened this issue Dec 19, 2024 · 1 comment
Closed
3 tasks done

Backfill alt id for all SMILE research samples #1358

ao508 opened this issue Dec 19, 2024 · 1 comment

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@ao508
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ao508 commented Dec 19, 2024

David emailed back Jan 6th that they can provide a datadump given a list of igo sample ids.
IGO IDs shared with David on Jan 7.
IGO ID-ALT ID mappings shared by David on Jan 8
Followed up on Jan 24 with additional 5300 samples that are still missing their ALT ID data.

Next steps:

  • write script that will backfill the additional properties with the alt id mappings.
  • write script that will identify which research samples are still missing their respective alt id mappings
  • share remaining samples that need mappings with David
@ao508
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ao508 commented Dec 19, 2024

Please add your planning poker estimate with Zenhub @qu8n

@ao508 ao508 changed the title Backfill alt id for all SMILE research samples Backfill alt id for all SMILE research samples [follow up with Cassidy Jan 6] Jan 2, 2025
@ao508 ao508 changed the title Backfill alt id for all SMILE research samples [follow up with Cassidy Jan 6] Backfill alt id for all SMILE research samples Jan 6, 2025
@ao508 ao508 closed this as completed Jan 29, 2025
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