This repository hosts documentation about inkscape extensions that can help with easy and reproducible figures
Base Inkscape extension which embeds images generated by ImageJ macros into current selected rectangle, and adds some helper functions.
- RScript Panel: embeds image results from R scripts into current document.
- PyMOL Panel: renders the .rml script associated with current element using PyMOL molecular viewer and embeds it into current document.
- Processing Panel:embeds the svg result of a Processing sketch into current document.
- Panel Labels: adds a text label to all selected rectangles or images.
- Lane Labels: adds customizable lane labels to the selected rectangle or image.
- this is an experimental work in progress, it works on my MacOs 10.11.6 and 10.15.7.
- currently needs Inkscape version 1.2
- For ImageJ Macro Panel extension you will need a pre-installed version of ImageJ, or at least a copy of ij.jar (https://imagej.nih.gov/ij/). Works with ImageJ 1.53r.
- For RScript Panel extension you will need a instance of R (https://cran.r-project.org/). Works with R version 3.3.2.
- For Processing Panel extension you will need to first install Processing (https://processing.org/download/) and then follow the instructions for installation of processing-java command line tool (https://github.com/processing/processing/wiki/Command-Line)
- For PyMOL Panel extension you will need to first install PyMOL (I followed instructions for Macport at https://pymolwiki.org/index.php/MAC_Install#Open-Source_PyMOL)
- Configure paths and options needed to launch external programs as needed on your system.
The latest code for the Inkscape Figure Extensions is at https://gitlab.com/doctormo/inkscape-imagej-panel,