Code associated with "A complete reference genome improves analysis of human genetic variation" for analyses performed by the Dennis Lab.
- collapsed_dups: code used to obtain collapsed duplications in GRCh38 and T2T-CHM13v1.0
- clinical_genomics: code used to evaluate impact of collapsed duplication in clinical genomics for section "Impact of T2T-CHM13 on cClinical gGenomics"
- ideogram: contains code used to generate Fig. 1A and 1B.