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Merge branch 'ar/docs-0.4.4-rc1' into 'master'
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Ar/docs 0.4.4 rc1

See merge request machine-learning/modkit!254
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ArtRand committed Feb 20, 2025
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Expand Up @@ -4,6 +4,13 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [v0.4.4-rc1]
### Fixes
- [bedmethyl, merge] Merge and write concurrently, improves memory usage and runtime massively.
- [dmr] Don't fail an entire section (i.e. batch) when one sample does not have a particular contig.
- [modbam, check-tags] Fix counter so that records that fail reading are counted.
- [pileup, sampler] Don't use non-primary alignments when calculating pass thresholds.

## [v0.4.3]
### Adds
- [bedmethyl] Extract bigWig tracks from bedMethyl files
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