v0.1.8

Changes

• [call-mods] Emit 0 ML value when a mod code is not called, previously the call was omitted (only the called mod was emitted).

Adds

• [adjust-mods, call-mods, pileup, sample-probs, summary, extract] Allow --edge-filter that will remove base modification probabilities at the ends of reads.

Fixes

• [call-mods] --no-filtering flag properly handled.

Deprecated

• [adjust-mods] In order to allow --edge-filter without also performing an ignore or convert, in the next release --ignore will require a explicit argument (h is no longer the default). In this release, when no edge filter, conversion, or ignore is provided, h will be used for ignore, but this behavior will be removed in the next release.