Merge pull request #17 from nasa/feature/issue-16-move-not-yet-comple…

…te-tutorials-into-an-in-development-subdirectory

reorganize and revise presentation of notebooks in quarto-rendered page

.gitignore

@@ -0,0 +1,139 @@
+/.quarto/
+.html
+_site/*
+.idea/*
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Pycharm stuff:
+.idea/
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+/notebooks/temp_check.ipynb
+/api_diagram.dio
+
+# Mac Finder
+.DS_Store

DSCOVR/DSCOVR_EPIC_L4_TrO3_vs_Pandora.py → DSCOVR/additional_drafts/DSCOVR_EPIC_L4_TrO3_vs_Pandora.py

@@ -519,11 +519,11 @@ def regress_0intercept(x, y):
   print(EPIC_link)
   EPIC_fname = EPIC_link.split('/')[-1]
   downloaded_files = earthaccess.download(EPIC_link,
-                                          local_path='.')
+                                          local_path='../../_additional_scripts/DSCOVR')
 # check if file exists in the local directory,
 # if not, try to download again, if second attampt to download fails, remove from the list
   if not os.path.exists(EPIC_fname):
-    downloaded_files = earthaccess.download(EPIC_link, local_path='.')
+    downloaded_files = earthaccess.download(EPIC_link, local_path='../../_additional_scripts/DSCOVR')
     if not os.path.exists(EPIC_fname): failed_links.append(EPIC_link)
 
 for link in failed_links: EPIC_links.remove(link)

DSCOVR/additional_drafts/DSCOVR_EPIC_L4_TrO3_vs_Pandora_readme.md

@@ -0,0 +1,12 @@
+The code plots three different versions of total ozone column timeseries from 
+DSCOVR_EPIC_L4_TrO3 and Pandora data. 
+The code allows a user to select a Pandora station of interest and input the desired timeframe. 
+DSCOVR EPIC data covering the location of the selected Pandora station and timeframe are 
+downloaded on-the-fly by the `earthaccess` library. 
+Both Pandora and DSCOVR EPIC data are read to form timeseries. 
+The timeseries are first plotted without uncertainties of Pandora retrievals that are added 
+in the second version of the plot. This version is usually messy as there are many more 
+Pandora retrievals than that from EPIC. 
+For this reason, Pandora measurements (along with their uncertainties) are averaged (smoothed) 
+to the times of EPIC measurements. This makes two timeseries directly comparable. 
+The result is plotted in the third version of the graph.

DSCOVR/additional_drafts/EPIC_L2_readme.md

@@ -0,0 +1,17 @@
+Codes `epic_l2_aer_timeseries_web.py`, `epic_l2_aer_timeseries.py`, `epic_l2_to3_timeseries_web.py`, 
+and `epic_l2_to3_timeseries.py`
+read DSCOVR EPIC L2 aerosol and ozone products, re-grid the AOD and total ozone column to a regular grid,
+and write timeseries of these variables at the positions of interest (POIs) to output files.
+The user must create a file named `POI_list` containing POI(s) inforamtion.
+An example of `POI_list` is provided.
+
+'_web' versions take a month of interest as a command line argument (in the form of a string `'yyyymm'`),
+check the ASDC direct download site for all available data files, download, and process them.
+The files are then deleted;
+however, the user can comment the delete statement out (see comments in the codes).
+To be able to find and download data files,
+the user must have an account at https://urs.earthdata.nasa.gov/
+and use that account to create an access token and update variable token (see comments in the codes).
+
+Versions without '_web' are driven by a user-created list of data files that user must have on a local disk.
+The list is supplied to the codes as a command line argument.