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Add NAVis to data section
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schlegelp committed Sep 20, 2024
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Expand Up @@ -171,17 +171,20 @@ Install the Python dependencies using `!` to run a shell command from a Jupyter
sure that any updates installed via our call to `!pip install` actually take effect, you should click `Runtime` -> "Restart Session"
to restart the Python kernel.

## Data

During the workshop, we will be analyzing data from the 2020 paper ["Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells"](https://www.cell.com/cell/pdf/S0092-8674(20)31254-X.pdf) by Gouwens, Sorensen, Baftizadeh et. al.

All artifacts for the NAVis (Monday) and CAJAL (Tuesday) presentations are available in this [Dropbox folder](https://www.dropbox.com/scl/fo/l242i29tqnxrpsmei4ji2/AEfUqnzMxszdi6VFvKejwS0?rlkey=dz4p5m4442nyodogyjpzl83zl&st=zh7khnyy&dl=0). Just download the whole thing and put it somewhere you will be able to find it during the workshop.

For Pynapple and Nemos (Monday), the workshop tutorial discusses how to download the necessary data - see [Part 1](https://pynapple-org.github.io/single-cell-neuropython-workshop-2024/generated/gallery/example_load_to_pynapple/) and [Part 3](https://pynapple-org.github.io/single-cell-neuropython-workshop-2024/generated/gallery/tutorial_pynapple_nemos_single_cell_full), in the "Data Streaming" section.

## Getting Help
The workshop organizers can be contacted for installation help in the [Slack group](https://join.slack.com/t/pythontoolsfo-ehx1178/shared_invite/zt-2qjzd1c44-NZ~9kt0~kh47X6t80tK8Mg) for the workshop or using the [Discussions](https://github.com/navis-org/neuropython2024/discussions) in this website's Github repository.

<!--
<!--
!!! Question "What about data?!"
We're still putting the finishing touches on the exercises we want to run with you!
Once that dust has settled, we will share the data artefacts you'll need to follow along during the course. -->
## Example Datasets
During the workshop, we will be analyzing data from the 2020 paper ["Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells"](https://www.cell.com/cell/pdf/S0092-8674(20)31254-X.pdf) by Gouwens, Sorensen, Baftizadeh et. al.

All artifacts for the CAJAL presentation on Tuesday are available in this [Dropbox folder](https://www.dropbox.com/scl/fo/l242i29tqnxrpsmei4ji2/AEfUqnzMxszdi6VFvKejwS0?rlkey=dz4p5m4442nyodogyjpzl83zl&st=zh7khnyy&dl=0).

For Pynapple and Nemos, the workshop tutorial discusses how to download the necessary data - see [Part 1](https://pynapple-org.github.io/single-cell-neuropython-workshop-2024/generated/gallery/example_load_to_pynapple/) and [Part 3](https://pynapple-org.github.io/single-cell-neuropython-workshop-2024/generated/gallery/tutorial_pynapple_nemos_single_cell_full), in the "Data Streaming" section.
Once that dust has settled, we will share the data artefacts you'll need to follow along during the course.
-->

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