Use CATMAID stack info to create xarray.DataArrays #81
Workflow file for this run
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| name: Tests | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }}-${{ matrix.python-version }}-${{ matrix.igraph }} | |
| cancel-in-progress: true | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: | |
| - '3.8' | |
| - '3.9' | |
| - '3.10' | |
| - '3.11' | |
| igraph: ["igraph", "no-igraph"] | |
| steps: | |
| # # This cancels any such job that is still runnning | |
| # - name: Cancel Previous Runs | |
| # uses: styfle/[email protected] | |
| # with: | |
| # access_token: ${{ github.token }} | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Linux libraries | |
| run: | | |
| sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \ | |
| libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \ | |
| libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0 graphviz graphviz-dev | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install pathos imageio | |
| pip install pytest coveralls pytest-cov | |
| - name: Install pymaid | |
| run: pip install -e . | |
| - run: pip install python-igraph | |
| if: ${{ matrix.igraph == 'igraph' }} | |
| - name: Test | |
| run: | | |
| pytest --cov=./ --verbose | |
| # coveralls |