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Landmark match #234

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merged 4 commits into from
Jan 15, 2024
Merged

Landmark match #234

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45bf7db
LandmarkMatcher class
clbarnes Jun 13, 2023
b68d062
Document landmark matchers
clbarnes Jun 13, 2023
30e6726
improve landmarks docs
clbarnes Jul 5, 2023
1ad5965
Landmarks: minor docs changes
clbarnes Nov 14, 2023
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2 changes: 2 additions & 0 deletions docs/source/api.rst
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Expand Up @@ -160,6 +160,8 @@ Functions to fetch data about landmarks.

pymaid.get_landmarks
pymaid.get_landmark_groups
pymaid.LandmarkMatcher
pymaid.CrossProjectLandmarkMatcher

Reconstruction samplers
-----------------------
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3 changes: 3 additions & 0 deletions docs/source/whats_new.rst
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Expand Up @@ -17,6 +17,9 @@ What's new?
like in the CATMAID frontend.
- :func:`pymaid.get_stacks`, :func:`pymaid.get_stack_info`, :func:`pymaid.get_mirror_info` functions for getting information about image data
- :class:`pymaid.stack.Stack` class for accessing N5 and JPEG tile image data as a :class:`xarray.DataArray`
- - :class:`pymaid.LandmarkMatcher` and :class:`pymaid.CrossProjectLandmarkMatcher`
for matching paired landmarks for use in transformations within a project
(e.g. left-right or segmental) or between projects (e.g. different animals)
* - 2.4.0
- 27/05/23
- - :func:`pymaid.get_annotation_graph` deprecated in favour of the new
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6 changes: 3 additions & 3 deletions pymaid/fetch/__init__.py
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Expand Up @@ -54,7 +54,7 @@

from .. import core, utils, config, cache
from navis import in_volume
from .landmarks import get_landmarks, get_landmark_groups
from .landmarks import get_landmarks, get_landmark_groups, LandmarkMatcher, CrossProjectLandmarkMatcher
from .skeletons import get_skeleton_ids
from .annotations import get_annotation_graph, get_entity_graph, get_annotation_id
from .stack import get_stacks, get_stack_info, get_mirror_info
Expand Down Expand Up @@ -91,8 +91,8 @@
'get_origin', 'get_skids_by_origin',
'get_sampler', 'get_sampler_domains', 'get_sampler_counts',
'get_skeleton_change',
'get_landmarks',
'get_landmark_groups',
'get_landmarks', 'get_landmark_groups',
'LandmarkMatcher', 'CrossProjectLandmarkMatcher',
'get_skeleton_ids',
'get_stacks', 'get_stack_info', 'get_mirror_info',
]
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