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@ncezid-biome

NCEZID-EDLB

Bioinformatics projects spanning the Bioinformatics Research and Development (BiRD) and Culture Independent and Metagenomics Subtyping (CIMS) Teams in EDLB

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  1. pn2.0-mlst-databases pn2.0-mlst-databases Public

    Databases for wg/cgMLST analysis with the PN2.0 software

    10 1

  2. HMAS-QC-Pipeline2 HMAS-QC-Pipeline2 Public

    An analysis pipeline for initial quality control and denoising of highly-multiplexed amplicon sequencing (HMAS) data, now without using mothur (as was used in the previous version)

    HTML 8 2

  3. datasets datasets Public

    Benchmark and toy datasets

    Perl 5 1

  4. trapical trapical Public

    trapical: trapical rapidly aligns Pulsenet islolate core alleles

    Python 4

  5. bsProfile bsProfile Public

    Make a bootstrap MLST tree from your profiles

    Perl 4

  6. HMAS-QC-Pipeline HMAS-QC-Pipeline Public

    Forked from jessicarowell/HMAS-QC-Pipeline

    A pipeline for performing quality control on HMAS data, in preparation for downstream MLST-like or AMR-like analyses.

    Python 3 1

Repositories

Showing 10 of 27 repositories
  • checkSraIfUploaded Public

    Check if your reads have already been uploaded to NCBI

    ncezid-biome/checkSraIfUploaded’s past year of commit activity
    Perl 0 MIT 0 0 0 Updated Dec 17, 2024
  • BIOME-scripts Public

    random scripts

    ncezid-biome/BIOME-scripts’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Nov 26, 2024
  • bsProfile Public

    Make a bootstrap MLST tree from your profiles

    ncezid-biome/bsProfile’s past year of commit activity
    Perl 4 MIT 0 0 0 Updated Nov 25, 2024
  • HMAS-QC-Pipeline2 Public

    An analysis pipeline for initial quality control and denoising of highly-multiplexed amplicon sequencing (HMAS) data, now without using mothur (as was used in the previous version)

    ncezid-biome/HMAS-QC-Pipeline2’s past year of commit activity
    HTML 8 MIT 2 2 0 Updated Oct 10, 2024
  • ANI-paper Public
    ncezid-biome/ANI-paper’s past year of commit activity
    Ruby 0 0 0 0 Updated Oct 8, 2024
  • datasets Public

    Benchmark and toy datasets

    ncezid-biome/datasets’s past year of commit activity
    Perl 5 MIT 1 9 0 Updated Oct 2, 2024
  • hash_sequence Public

    A Rosetta Stone for getting hashsums

    ncezid-biome/hash_sequence’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Sep 26, 2024
  • pn2.0-mlst-databases Public

    Databases for wg/cgMLST analysis with the PN2.0 software

    ncezid-biome/pn2.0-mlst-databases’s past year of commit activity
    10 1 0 0 Updated Sep 11, 2024
  • tripod Public

    An analysis pipeline for checking the performance of stool_HMAS, isolate_HMAS, isolate_WGS data sets

    ncezid-biome/tripod’s past year of commit activity
    0 MIT 0 0 0 Updated Sep 9, 2024
  • trapical Public

    trapical: trapical rapidly aligns Pulsenet islolate core alleles

    ncezid-biome/trapical’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Sep 5, 2024

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