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diff --git a/Part1/packages.bib b/Part1/packages.bib
@@ -19,15 +19,15 @@ @Manual{R-knitr
   title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
   author = {Yihui Xie},
   year = {2024},
-  note = {R package version 1.47},
+  note = {R package version 1.49},
   url = {https://yihui.org/knitr/},
 }
 
 @Manual{R-rmarkdown,
   title = {rmarkdown: Dynamic Documents for R},
   author = {JJ Allaire and Yihui Xie and Christophe Dervieux and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
   year = {2024},
-  note = {R package version 2.27},
+  note = {R package version 2.29},
   url = {https://github.com/rstudio/rmarkdown},
 }
 

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diff --git a/book/data.html b/book/data.html
diff --git a/book/eda.html b/book/eda.html
@@ -530,32 +530,23 @@ <h2><span class="header-section-number">3.3</span> Data Inspection<a href="eda.h
 <span id="cb181-27"><a href="eda.html#cb181-27" tabindex="-1"></a><span class="co"># Examine genhz vs hznames (wide format)</span></span>
 <span id="cb181-28"><a href="eda.html#cb181-28" tabindex="-1"></a><span class="fu">table</span>(h<span class="sc">$</span>genhz, h<span class="sc">$</span>hzname)</span></code></pre></div>
 <pre><code>##           
-##            2BC 2BCt 2Bt1 2Bt2 2Bt3 2Bt4 2Bt5 2CB 2CBt 2Cr 2Crt 2R  A A1 A2 AB
-##   A          0    0    0    0    0    0    0   0    0   0    0  0 97  7  7  0
-##   BAt        0    0    0    0    0    0    0   0    0   0    0  0  0  0  0  1
-##   Bt1        0    0    0    0    0    0    0   0    0   0    0  0  0  0  0  0
-##   Bt2        1    1    3    8    8    6    1   1    1   0    0  0  0  0  0  0
-##   Cr         0    0    0    0    0    0    0   0    0   4    2  0  0  0  0  0
-##   R          0    0    0    0    0    0    0   0    0   0    0  6  0  0  0  0
-##   not-used   0    0    0    0    0    0    0   0    0   0    0  0  0  0  0  0
+##            2BC 2BCt 2Bt1 2Bt2 2Bt3 2Bt4 2Bt5 2CB 2CBt 2Cr 2Crt 2R  A A1 A2 AB ABt Ad Ap  B BA BAt BC BCt Bt Bt1 Bt2
+##   A          0    0    0    0    0    0    0   0    0   0    0  0 97  7  7  0   0  1  1  0  0   0  0   0  0   0   0
+##   BAt        0    0    0    0    0    0    0   0    0   0    0  0  0  0  0  1   0  0  0  0 31   8  0   0  0   0   0
+##   Bt1        0    0    0    0    0    0    0   0    0   0    0  0  0  0  0  0   2  0  0  0  0   0  0   0  8  93  88
+##   Bt2        1    1    3    8    8    6    1   1    1   0    0  0  0  0  0  0   0  0  0  0  0   0  4  16  0   0   0
+##   Cr         0    0    0    0    0    0    0   0    0   4    2  0  0  0  0  0   0  0  0  0  0   0  0   0  0   0   0
+##   R          0    0    0    0    0    0    0   0    0   0    0  6  0  0  0  0   0  0  0  0  0   0  0   0  0   0   0
+##   not-used   0    0    0    0    0    0    0   0    0   0    0  0  0  0  0  0   0  0  0  1  0   0  0   0  0   0   0
 ##           
-##            ABt Ad Ap  B BA BAt BC BCt Bt Bt1 Bt2 Bt3 Bt4 Bw Bw1 Bw2 Bw3  C CBt
-##   A          0  1  1  0  0   0  0   0  0   0   0   0   0  0   0   0   0  0   0
-##   BAt        0  0  0  0 31   8  0   0  0   0   0   0   0  0   0   0   0  0   0
-##   Bt1        2  0  0  0  0   0  0   0  8  93  88   0   0 10   2   2   1  0   0
-##   Bt2        0  0  0  0  0   0  4  16  0   0   0  47   8  0   0   0   0  6   6
-##   Cr         0  0  0  0  0   0  0   0  0   0   0   0   0  0   0   0   0  0   0
-##   R          0  0  0  0  0   0  0   0  0   0   0   0   0  0   0   0   0  0   0
-##   not-used   0  0  0  1  0   0  0   0  0   0   0   0   0  0   0   0   0  0   0
-##           
-##            Cd Cr Cr/R Crt H1 Oi  R Rt
-##   A         0  0    0   0  0  0  0  0
-##   BAt       0  0    0   0  0  0  0  0
-##   Bt1       0  0    0   0  0  0  0  0
-##   Bt2       1  0    0   0  0  0  0  0
-##   Cr        0 49    0  20  0  0  0  0
-##   R         0  0    1   0  0  0 40  1
-##   not-used  0  0    0   0  1 24  0  0</code></pre>
+##            Bt3 Bt4 Bw Bw1 Bw2 Bw3  C CBt Cd Cr Cr/R Crt H1 Oi  R Rt
+##   A          0   0  0   0   0   0  0   0  0  0    0   0  0  0  0  0
+##   BAt        0   0  0   0   0   0  0   0  0  0    0   0  0  0  0  0
+##   Bt1        0   0 10   2   2   1  0   0  0  0    0   0  0  0  0  0
+##   Bt2       47   8  0   0   0   0  6   6  1  0    0   0  0  0  0  0
+##   Cr         0   0  0   0   0   0  0   0  0 49    0  20  0  0  0  0
+##   R          0   0  0   0   0   0  0   0  0  0    1   0  0  0 40  1
+##   not-used   0   0  0   0   0   0  0   0  0  0    0   0  1 24  0  0</code></pre>
 <div class="sourceCode" id="cb183"><pre class="sourceCode r codeBlocks"><code class="sourceCode r"><span id="cb183-1"><a href="eda.html#cb183-1" tabindex="-1"></a><span class="co"># Examine matching pairs (long format)</span></span>
 <span id="cb183-2"><a href="eda.html#cb183-2" tabindex="-1"></a>h <span class="sc">%&gt;%</span> <span class="fu">group_by</span>(genhz, hzname) <span class="sc">%&gt;%</span> <span class="fu">count</span>()</span></code></pre></div>
 <pre><code>## # A tibble: 43 × 3
@@ -579,22 +570,14 @@ <h2><span class="header-section-number">3.3</span> Data Inspection<a href="eda.h
 <div class="sourceCode" id="cb186"><pre class="sourceCode r codeBlocks"><code class="sourceCode r"><span id="cb186-1"><a href="eda.html#cb186-1" tabindex="-1"></a>h <span class="sc">%&gt;%</span></span>
 <span id="cb186-2"><a href="eda.html#cb186-2" tabindex="-1"></a>  <span class="fu">select</span>(genhz, clay, total_frags_pct, phfield, effclass) <span class="sc">%&gt;%</span></span>
 <span id="cb186-3"><a href="eda.html#cb186-3" tabindex="-1"></a>  <span class="fu">summary</span>()</span></code></pre></div>
-<pre><code>##       genhz          clay       total_frags_pct    phfield    
-##  A       :113   Min.   :10.00   Min.   : 0.00   Min.   :4.90  
-##  BAt     : 40   1st Qu.:18.00   1st Qu.: 0.00   1st Qu.:6.00  
-##  Bt1     :206   Median :22.00   Median : 5.00   Median :6.30  
-##  Bt2     :118   Mean   :23.63   Mean   :13.88   Mean   :6.18  
-##  Cr      : 75   3rd Qu.:28.00   3rd Qu.:20.00   3rd Qu.:6.50  
-##  R       : 48   Max.   :60.00   Max.   :95.00   Max.   :7.00  
-##  not-used: 26   NA&#39;s   :167                     NA&#39;s   :381   
-##    effclass        
-##  Length:626        
-##  Class :character  
-##  Mode  :character  
-##                    
-##                    
-##                    
-## </code></pre>
+<pre><code>##       genhz          clay       total_frags_pct    phfield       effclass        
+##  A       :113   Min.   :10.00   Min.   : 0.00   Min.   :4.90   Length:626        
+##  BAt     : 40   1st Qu.:18.00   1st Qu.: 0.00   1st Qu.:6.00   Class :character  
+##  Bt1     :206   Median :22.00   Median : 5.00   Median :6.30   Mode  :character  
+##  Bt2     :118   Mean   :23.63   Mean   :13.88   Mean   :6.18                     
+##  Cr      : 75   3rd Qu.:28.00   3rd Qu.:20.00   3rd Qu.:6.50                     
+##  R       : 48   Max.   :60.00   Max.   :95.00   Max.   :7.00                     
+##  not-used: 26   NA&#39;s   :167                     NA&#39;s   :381</code></pre>
 <p>The <code>summary()</code> function is known as a generic R function. It will return a preprogrammed summary for any R object. Because <code>h</code> is a data frame, we get a summary of each column. Factors will be summarized by their frequency (i.e., number of observations), while numeric or integer variables will print out a five number summary, and characters simply print their length. The number of missing observations for any variable will also be printed if they are present. If any of these metrics look unfamiliar to you, don’t worry we’ll cover them shortly.</p>
 <p>When you do have missing data and the function you want to run will not run with missing values, the following options are available:</p>
 <ol style="list-style-type: decimal">
@@ -608,11 +591,9 @@ <h2><span class="header-section-number">3.3</span> Data Inspection<a href="eda.h
 <pre><code>## [1] &quot;A&quot;        &quot;BAt&quot;      &quot;Bt1&quot;      &quot;Bt2&quot;      &quot;Cr&quot;       &quot;R&quot;        &quot;not-used&quot;</code></pre>
 <div class="sourceCode" id="cb190"><pre class="sourceCode r codeBlocks"><code class="sourceCode r"><span id="cb190-1"><a href="eda.html#cb190-1" tabindex="-1"></a><span class="co"># for characters and factors</span></span>
 <span id="cb190-2"><a href="eda.html#cb190-2" tabindex="-1"></a><span class="fu">sort</span>(<span class="fu">unique</span>(h<span class="sc">$</span>hzname)) </span></code></pre></div>
-<pre><code>##  [1] &quot;2BC&quot;  &quot;2BCt&quot; &quot;2Bt1&quot; &quot;2Bt2&quot; &quot;2Bt3&quot; &quot;2Bt4&quot; &quot;2Bt5&quot; &quot;2CB&quot;  &quot;2CBt&quot; &quot;2Cr&quot; 
-## [11] &quot;2Crt&quot; &quot;2R&quot;   &quot;A&quot;    &quot;A1&quot;   &quot;A2&quot;   &quot;AB&quot;   &quot;ABt&quot;  &quot;Ad&quot;   &quot;Ap&quot;   &quot;B&quot;   
-## [21] &quot;BA&quot;   &quot;BAt&quot;  &quot;BC&quot;   &quot;BCt&quot;  &quot;Bt&quot;   &quot;Bt1&quot;  &quot;Bt2&quot;  &quot;Bt3&quot;  &quot;Bt4&quot;  &quot;Bw&quot;  
-## [31] &quot;Bw1&quot;  &quot;Bw2&quot;  &quot;Bw3&quot;  &quot;C&quot;    &quot;CBt&quot;  &quot;Cd&quot;   &quot;Cr&quot;   &quot;Cr/R&quot; &quot;Crt&quot;  &quot;H1&quot;  
-## [41] &quot;Oi&quot;   &quot;R&quot;    &quot;Rt&quot;</code></pre>
+<pre><code>##  [1] &quot;2BC&quot;  &quot;2BCt&quot; &quot;2Bt1&quot; &quot;2Bt2&quot; &quot;2Bt3&quot; &quot;2Bt4&quot; &quot;2Bt5&quot; &quot;2CB&quot;  &quot;2CBt&quot; &quot;2Cr&quot;  &quot;2Crt&quot; &quot;2R&quot;   &quot;A&quot;    &quot;A1&quot;   &quot;A2&quot;   &quot;AB&quot;  
+## [17] &quot;ABt&quot;  &quot;Ad&quot;   &quot;Ap&quot;   &quot;B&quot;    &quot;BA&quot;   &quot;BAt&quot;  &quot;BC&quot;   &quot;BCt&quot;  &quot;Bt&quot;   &quot;Bt1&quot;  &quot;Bt2&quot;  &quot;Bt3&quot;  &quot;Bt4&quot;  &quot;Bw&quot;   &quot;Bw1&quot;  &quot;Bw2&quot; 
+## [33] &quot;Bw3&quot;  &quot;C&quot;    &quot;CBt&quot;  &quot;Cd&quot;   &quot;Cr&quot;   &quot;Cr/R&quot; &quot;Crt&quot;  &quot;H1&quot;   &quot;Oi&quot;   &quot;R&quot;    &quot;Rt&quot;</code></pre>
 <p>If the <code>unique()</code> function returned typos such as “BT” or “B t”, you could either fix your original dataset or you could make an adjustment in R, such as:</p>
 <div class="sourceCode" id="cb192"><pre class="sourceCode r codeBlocks"><code class="sourceCode r"><span id="cb192-1"><a href="eda.html#cb192-1" tabindex="-1"></a>h<span class="sc">$</span>hzname <span class="ot">&lt;-</span> <span class="fu">ifelse</span>(h<span class="sc">$</span>hzname <span class="sc">==</span> <span class="st">&quot;BT&quot;</span>, <span class="st">&quot;Bt&quot;</span>, h<span class="sc">$</span>hzname)</span></code></pre></div>
 <p>Typo errors such as these are a common problem with old pedon data in NASIS.</p>
@@ -1184,10 +1165,8 @@ <h3><span class="header-section-number">3.9.2</span> Circular data<a href="eda.h
 <span id="cb258-7"><a href="eda.html#cb258-7" tabindex="-1"></a>aspect <span class="ot">&lt;-</span> <span class="fu">circular</span>(aspect, <span class="at">template=</span><span class="st">&quot;geographic&quot;</span>, <span class="at">units=</span><span class="st">&quot;degrees&quot;</span>, <span class="at">modulo=</span><span class="st">&quot;2pi&quot;</span>)</span>
 <span id="cb258-8"><a href="eda.html#cb258-8" tabindex="-1"></a></span>
 <span id="cb258-9"><a href="eda.html#cb258-9" tabindex="-1"></a><span class="fu">summary</span>(aspect)</span></code></pre></div>
-<pre><code>##        n     Min.  1st Qu.   Median     Mean  3rd Qu.     Max.      Rho 
-## 101.0000  12.0000 255.0000 195.0000 199.5000 115.0000  20.0000   0.1772 
-##     NA&#39;s 
-##   5.0000</code></pre>
+<pre><code>##        n     Min.  1st Qu.   Median     Mean  3rd Qu.     Max.      Rho     NA&#39;s 
+## 101.0000  12.0000 255.0000 195.0000 199.5000 115.0000  20.0000   0.1772   5.0000</code></pre>
 <p>The numeric output is fine, but a following graphic is more revealing, which shows the dominant Southwest slope aspect.</p>
 <div class="sourceCode" id="cb260"><pre class="sourceCode r codeBlocks"><code class="sourceCode r"><span id="cb260-1"><a href="eda.html#cb260-1" tabindex="-1"></a><span class="fu">rose.diag</span>(aspect, <span class="at">bins =</span> <span class="dv">8</span>, <span class="at">col=</span><span class="st">&quot;grey&quot;</span>)</span></code></pre></div>
 <p><img src="s4ssbook_files/figure-html/unnamed-chunk-116-1.png" width="672" style="display: block; margin: auto;" /></p>

diff --git a/book/index.html b/book/index.html
@@ -538,10 +538,10 @@ <h2><span class="header-section-number">0.5</span> Install Required Packages<a h
 <span id="cb3-12"><a href="index.html#cb3-12" tabindex="-1"></a>    <span class="co"># graphics</span></span>
 <span id="cb3-13"><a href="index.html#cb3-13" tabindex="-1"></a>    <span class="st">&quot;ggplot2&quot;</span>, <span class="st">&quot;latticeExtra&quot;</span>, <span class="st">&quot;maps&quot;</span>, <span class="st">&quot;spData&quot;</span>, <span class="st">&quot;tmap&quot;</span>, <span class="st">&quot;kableExtra&quot;</span>, <span class="st">&quot;corrplot&quot;</span>, <span class="st">&quot;farver&quot;</span>,</span>
 <span id="cb3-14"><a href="index.html#cb3-14" tabindex="-1"></a>    <span class="st">&quot;mapview&quot;</span>, <span class="st">&quot;ggmap&quot;</span>, <span class="st">&quot;plotrix&quot;</span>, <span class="st">&quot;rpart.plot&quot;</span>, <span class="st">&quot;visreg&quot;</span>, <span class="st">&quot;diagram&quot;</span>, <span class="st">&quot;GGally&quot;</span>, <span class="st">&quot;wesanderson&quot;</span>,</span>
-<span id="cb3-15"><a href="index.html#cb3-15" tabindex="-1"></a>    <span class="st">&quot;viridisLite&quot;</span>,</span>
+<span id="cb3-15"><a href="index.html#cb3-15" tabindex="-1"></a>    <span class="st">&quot;viridisLite&quot;</span>, <span class="st">&quot;prettymapr&quot;</span>,</span>
 <span id="cb3-16"><a href="index.html#cb3-16" tabindex="-1"></a>    <span class="co"># modeling</span></span>
 <span id="cb3-17"><a href="index.html#cb3-17" tabindex="-1"></a>    <span class="st">&quot;car&quot;</span>, <span class="st">&quot;rms&quot;</span>, <span class="st">&quot;randomForest&quot;</span>, <span class="st">&quot;ranger&quot;</span>, <span class="st">&quot;party&quot;</span>,</span>
-<span id="cb3-18"><a href="index.html#cb3-18" tabindex="-1"></a>    <span class="st">&quot;caret&quot;</span>, <span class="st">&quot;vegan&quot;</span>, <span class="st">&quot;ape&quot;</span>, <span class="st">&quot;shape&quot;</span>, <span class="st">&quot;modEvA&quot;</span>, <span class="st">&quot;gower&quot;</span>,</span>
+<span id="cb3-18"><a href="index.html#cb3-18" tabindex="-1"></a>    <span class="st">&quot;caret&quot;</span>, <span class="st">&quot;vegan&quot;</span>, <span class="st">&quot;ape&quot;</span>, <span class="st">&quot;shape&quot;</span>, <span class="st">&quot;modEvA&quot;</span>, <span class="st">&quot;gower&quot;</span>, <span class="st">&quot;MBESS&quot;</span>, <span class="st">&quot;yardstick&quot;</span>,</span>
 <span id="cb3-19"><a href="index.html#cb3-19" tabindex="-1"></a>    <span class="co"># sampling</span></span>
 <span id="cb3-20"><a href="index.html#cb3-20" tabindex="-1"></a>    <span class="st">&quot;clhs&quot;</span>, <span class="st">&quot;spcosa&quot;</span></span>
 <span id="cb3-21"><a href="index.html#cb3-21" tabindex="-1"></a>  )</span>

diff --git a/book/s4ssbook_files/figure-html/unnamed-chunk-170-1.png b/book/s4ssbook_files/figure-html/unnamed-chunk-170-1.png
diff --git a/book/s4ssbook_files/figure-html/unnamed-chunk-182-1.png b/book/s4ssbook_files/figure-html/unnamed-chunk-182-1.png
diff --git a/book/s4ssbook_files/figure-html/unnamed-chunk-184-1.png b/book/s4ssbook_files/figure-html/unnamed-chunk-184-1.png
diff --git a/book/s4ssbook_files/figure-html/unnamed-chunk-62-1.png b/book/s4ssbook_files/figure-html/unnamed-chunk-62-1.png
diff --git a/book/sampling.html b/book/sampling.html
@@ -866,18 +866,12 @@ <h2><span class="header-section-number">5.3</span> Evaluating a Sampling Strateg
 <span id="cb399-30"><a href="sampling.html#cb399-30" tabindex="-1"></a></span>
 <span id="cb399-31"><a href="sampling.html#cb399-31" tabindex="-1"></a><span class="co"># Summarize the sample values</span></span>
 <span id="cb399-32"><a href="sampling.html#cb399-32" tabindex="-1"></a><span class="fu">aggregate</span>(slope <span class="sc">~</span> method, <span class="at">data =</span> s, <span class="cf">function</span>(x) <span class="fu">round</span>(<span class="fu">summary</span>(x)))</span></code></pre></div>
-<pre><code>##              method slope.Min. slope.1st Qu. slope.Median slope.Mean
-## 1              cLHS          3             8           15         16
-## 2              CSCS          1             7           15         16
-## 3     Simple Random          0            14           17         18
-## 4 Simple Random 400          0             6           14         15
-## 5 Systematic Random          0             6           12         13
-##   slope.3rd Qu. slope.Max.
-## 1            21         32
-## 2            24         36
-## 3            22         34
-## 4            22         43
-## 5            17         34</code></pre>
+<pre><code>##              method slope.Min. slope.1st Qu. slope.Median slope.Mean slope.3rd Qu. slope.Max.
+## 1              cLHS          3             8           15         16            21         32
+## 2              CSCS          1             7           15         16            24         36
+## 3     Simple Random          0            14           17         18            22         34
+## 4 Simple Random 400          0             6           14         15            22         43
+## 5 Systematic Random          0             6           12         13            17         34</code></pre>
 <div class="sourceCode" id="cb401"><pre class="sourceCode r codeBlocks"><code class="sourceCode r"><span id="cb401-1"><a href="sampling.html#cb401-1" tabindex="-1"></a><span class="co"># Plot overlapping density plots to compare the distributions between the large and small samples</span></span>
 <span id="cb401-2"><a href="sampling.html#cb401-2" tabindex="-1"></a><span class="fu">ggplot</span>(s, <span class="fu">aes</span>(<span class="at">x =</span> slope, <span class="at">col =</span> method)) <span class="sc">+</span> </span>
 <span id="cb401-3"><a href="sampling.html#cb401-3" tabindex="-1"></a>        <span class="fu">geom_density</span>(<span class="at">cex =</span> <span class="dv">2</span>)</span></code></pre></div>

diff --git a/book/search_index.json b/book/search_index.json
diff --git a/book/spatial.html b/book/spatial.html