bump book

Part1/packages.bib

@@ -1,11 +1,3 @@
-@Manual{R-aqp,
-  title = {aqp: Algorithms for Quantitative Pedology},
-  author = {Dylan Beaudette and Pierre Roudier and Andrew Brown},
-  note = {R package version 2.1.0},
-  url = {https://github.com/ncss-tech/aqp},
-  year = {2025},
-}
-
 @Manual{R-base,
   title = {R: A Language and Environment for Statistical Computing},
   author = {{R Core Team}},
@@ -23,63 +15,6 @@ @Manual{R-bookdown
   url = {https://github.com/rstudio/bookdown},
 }
 
-@Manual{R-circular,
-  title = {circular: Circular Statistics},
-  author = {Ulric Lund and Claudio Agostinelli},
-  year = {2024},
-  note = {R package version 0.5-1},
-  url = {https://CRAN.R-project.org/package=circular},
-}
-
-@Manual{R-clhs,
-  title = {clhs: Conditioned Latin Hypercube Sampling},
-  author = {Pierre Roudier},
-  year = {2021},
-  note = {R package version 0.9.0},
-  url = {https://github.com/pierreroudier/clhs/},
-}
-
-@Manual{R-diagram,
-  title = {diagram: Functions for Visualising Simple Graphs (Networks), Plotting
-Flow Diagrams},
-  author = {Karline Soetaert},
-  year = {2020},
-  note = {R package version 1.6.5},
-  url = {https://CRAN.R-project.org/package=diagram},
-}
-
-@Manual{R-dplyr,
-  title = {dplyr: A Grammar of Data Manipulation},
-  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller and Davis Vaughan},
-  year = {2023},
-  note = {R package version 1.1.4},
-  url = {https://dplyr.tidyverse.org},
-}
-
-@Manual{R-exactextractr,
-  title = {exactextractr: Fast Extraction from Raster Datasets using Polygons},
-  author = {{Daniel Baston}},
-  year = {2023},
-  note = {R package version 0.10.0},
-  url = {https://isciences.gitlab.io/exactextractr/},
-}
-
-@Manual{R-GGally,
-  title = {GGally: Extension to ggplot2},
-  author = {Barret Schloerke and Di Cook and Joseph Larmarange and Francois Briatte and Moritz Marbach and Edwin Thoen and Amos Elberg and Jason Crowley},
-  year = {2024},
-  note = {R package version 2.2.1},
-  url = {https://ggobi.github.io/ggally/},
-}
-
-@Manual{R-ggplot2,
-  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
-  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington and Teun {van den Brand}},
-  year = {2024},
-  note = {R package version 3.5.1},
-  url = {https://ggplot2.tidyverse.org},
-}
-
 @Manual{R-knitr,
   title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
   author = {Yihui Xie},
@@ -88,30 +23,6 @@ @Manual{R-knitr
   url = {https://yihui.org/knitr/},
 }
 
-@Manual{R-lattice,
-  title = {lattice: Trellis Graphics for R},
-  author = {Deepayan Sarkar},
-  year = {2024},
-  note = {R package version 0.22-6},
-  url = {https://lattice.r-forge.r-project.org/},
-}
-
-@Manual{R-mapview,
-  title = {mapview: Interactive Viewing of Spatial Data in R},
-  author = {Tim Appelhans and Florian Detsch and Christoph Reudenbach and Stefan Woellauer},
-  year = {2023},
-  note = {R package version 2.11.2},
-  url = {https://github.com/r-spatial/mapview},
-}
-
-@Manual{R-rJava,
-  title = {rJava: Low-Level R to Java Interface},
-  author = {Simon Urbanek},
-  year = {2024},
-  note = {R package version 1.0-11},
-  url = {http://www.rforge.net/rJava/},
-}
-
 @Manual{R-rmarkdown,
   title = {rmarkdown: Dynamic Documents for R},
   author = {JJ Allaire and Yihui Xie and Christophe Dervieux and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
@@ -120,89 +31,6 @@ @Manual{R-rmarkdown
   url = {https://github.com/rstudio/rmarkdown},
 }
 
-@Manual{R-sf,
-  title = {sf: Simple Features for R},
-  author = {Edzer Pebesma},
-  year = {2024},
-  note = {R package version 1.0-19},
-  url = {https://r-spatial.github.io/sf/},
-}
-
-@Manual{R-shape,
-  title = {shape: Functions for Plotting Graphical Shapes, Colors},
-  author = {Karline Soetaert},
-  year = {2024},
-  note = {R package version 1.4.6.1},
-  url = {https://CRAN.R-project.org/package=shape},
-}
-
-@Manual{R-sharpshootR,
-  title = {sharpshootR: A Soil Survey Toolkit},
-  author = {Dylan Beaudette and Jay Skovlin and Stephen Roecker and Andrew Brown},
-  note = {R package version 2.3.2},
-  url = {https://github.com/ncss-tech/sharpshootR},
-  year = {2025},
-}
-
-@Manual{R-soilDB,
-  title = {soilDB: Soil Database Interface},
-  author = {Dylan Beaudette and Jay Skovlin and Stephen Roecker and Andrew Brown},
-  note = {R package version 2.8.7},
-  url = {https://github.com/ncss-tech/soilDB/},
-  year = {2025},
-}
-
-@Manual{R-soilReports,
-  title = {soilReports: R Markdown Reports and Convenience Functions for Soil Survey},
-  author = {USDA-NRCS Soil Survey Staff},
-  note = {R package version 0.8.2},
-  url = {https://github.com/ncss-tech/soilReports},
-  year = {2025},
-}
-
-@Manual{R-sp,
-  title = {sp: Classes and Methods for Spatial Data},
-  author = {Edzer Pebesma and Roger Bivand},
-  year = {2024},
-  note = {R package version 2.1-4},
-  url = {https://github.com/edzer/sp/},
-}
-
-@Manual{R-spcosa,
-  title = {spcosa: Spatial Coverage Sampling and Random Sampling from Compact
-Geographical Strata},
-  author = {Dennis Walvoort and Dick Brus and Jaap {de Gruijter}},
-  year = {2023},
-  note = {R package version 0.4-2},
-  url = {https://git.wur.nl/Walvo001/spcosa},
-}
-
-@Manual{R-terra,
-  title = {terra: Spatial Data Analysis},
-  author = {Robert J. Hijmans},
-  year = {2024},
-  note = {R package version 1.8-6},
-  url = {https://rspatial.org/},
-}
-
-@Manual{R-tidyr,
-  title = {tidyr: Tidy Messy Data},
-  author = {Hadley Wickham and Davis Vaughan and Maximilian Girlich},
-  year = {2024},
-  note = {R package version 1.3.1},
-  url = {https://tidyr.tidyverse.org},
-}
-
-@Article{aqp2013,
-  title = {Algorithms for quantitative pedology: A toolkit for soil scientists},
-  author = {{Beaudette} and {D.E.} and {Roudier} and {P.} and {O'Geen} and {A.T.}},
-  journal = {Computers \& Geosciences},
-  year = {2013},
-  volume = {52},
-  pages = {258-268},
-  url = {http://dx.doi.org/10.1016/j.cageo.2012.10.020},
-}
-
 @Book{bookdown2016,
   title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
   author = {Yihui Xie},
@@ -213,28 +41,6 @@ @Book{bookdown2016
   url = {https://bookdown.org/yihui/bookdown},
 }
 
-@Manual{circular2024,
-  title = {{R} package \texttt{circular}: Circular Statistics (version 0.5-1)},
-  author = {Claudio Agostinelli and Ulric Lund},
-  year = {2024},
-  url = {https://CRAN.R-project.org/package=circular},
-}
-
-@Manual{clhs2011,
-  title = {clhs: a R package for conditioned Latin hypercube sampling.},
-  author = {Pierre Roudier},
-  year = {2011},
-}
-
-@Book{ggplot22016,
-  author = {Hadley Wickham},
-  title = {ggplot2: Elegant Graphics for Data Analysis},
-  publisher = {Springer-Verlag New York},
-  year = {2016},
-  isbn = {978-3-319-24277-4},
-  url = {https://ggplot2.tidyverse.org},
-}
-
 @Book{knitr2015,
   title = {Dynamic Documents with {R} and knitr},
   author = {Yihui Xie},
@@ -256,16 +62,6 @@ @InCollection{knitr2014
   note = {ISBN 978-1466561595},
 }
 
-@Book{lattice2008,
-  title = {Lattice: Multivariate Data Visualization with R},
-  author = {Deepayan Sarkar},
-  year = {2008},
-  publisher = {Springer},
-  address = {New York},
-  isbn = {978-0-387-75968-5},
-  url = {http://lmdvr.r-forge.r-project.org},
-}
-
 @Book{rmarkdown2018,
   title = {R Markdown: The Definitive Guide},
   author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
@@ -286,83 +82,3 @@ @Book{rmarkdown2020
   url = {https://bookdown.org/yihui/rmarkdown-cookbook},
 }
 
-@Book{sf2023,
-  author = {Edzer Pebesma and Roger Bivand},
-  title = {{Spatial Data Science: With applications in R}},
-  year = {2023},
-  publisher = {{Chapman and Hall/CRC}},
-  url = {https://r-spatial.org/book/},
-  doi = {10.1201/9780429459016},
-}
-
-@Article{sf2018,
-  author = {Edzer Pebesma},
-  title = {{Simple Features for R: Standardized Support for Spatial Vector Data}},
-  year = {2018},
-  journal = {{The R Journal}},
-  doi = {10.32614/RJ-2018-009},
-  url = {https://doi.org/10.32614/RJ-2018-009},
-  pages = {439--446},
-  volume = {10},
-  number = {1},
-}
-
-@Article{sp2005,
-  author = {Edzer J. Pebesma and Roger Bivand},
-  title = {Classes and methods for spatial data in {R}},
-  journal = {R News},
-  year = {2005},
-  volume = {5},
-  number = {2},
-  pages = {9--13},
-  month = {November},
-  url = {https://CRAN.R-project.org/doc/Rnews/},
-}
-
-@Book{sp2013,
-  author = {Roger S. Bivand and Edzer Pebesma and Virgilio Gomez-Rubio},
-  title = {Applied spatial data analysis with {R}, Second edition},
-  year = {2013},
-  publisher = {Springer, NY},
-  url = {https://asdar-book.org/},
-}
-
-@Book{spcosa2006,
-  title = {Sampling for Natural Resource Monitoring},
-  author = {J. {de Gruijter} and D. Brus and M. Bierkens and M. Knotters},
-  publisher = {Springer},
-  address = {Berlin},
-  year = {2006},
-  doi = {10.1007/3-540-33161-1},
-  isbn = {978-3-540-22486-0},
-}
-
-@Article{spcosa1999,
-  title = {A sampling scheme for estimating the mean extractable phosphorus concentration of fields for environmental regulation},
-  author = {D. J. Brus and L. E. E. M. Spatjens and J. J. {de Gruijter}},
-  journal = {Geoderma},
-  year = {1999},
-  volume = {89},
-  pages = {129--148},
-  doi = {10.1016/S0016-7061(98)00123-2},
-}
-
-@Article{spcosa2010,
-  title = {An R package for spatial coverage sampling and random sampling from compact geographical strata by k-means},
-  author = {D. J. J. Walvoort and D. J. Brus and J. J. {de Gruijter}},
-  journal = {Computers \& Geosciences},
-  year = {2010},
-  volume = {36},
-  pages = {1261--1267},
-  doi = {10.1016/j.cageo.2010.04.005},
-}
-
-@Book{spcosa2022,
-  title = {Spatial sampling with R},
-  author = {D. J. Brus},
-  publisher = {CRC Press},
-  year = {2022},
-  doi = {10.1201/9781003258940},
-  url = {https://github.com/DickBrus/SpatialSamplingwithR},
-}
-