Code

Pango build for Nextclade#15

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corneliusroemer wants to merge 21 commits intomasterneherlab/ncov-simple:masterfrom feat/pango-buildneherlab/ncov-simple:feat/pango-buildCopy head branch name to clipboard

+738-613

Commits

Commits on Nov 1, 2021

• feat: join pango designations onto metadata

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Commits on Nov 4, 2021

• feat: join pango designation lineage onto metadata

  corneliusroemer

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• feat: make pango designation joins part of preprocess

  corneliusroemer

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• feat: create filter rules for pango build

  corneliusroemer

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• fix: add distance map configs to default/parameters.yaml

  corneliusroemer

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• fix: distance_map -> distance_maps typo

  corneliusroemer

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• feat: add pango-cluster to profiles

  corneliusroemer

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• fix: use proper auspice_config for pango build

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• chore: dos2unix since our profiles were sadly dosed

  corneliusroemer

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• fix: config overwrites keys not appends

  corneliusroemer

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• feat: add designation coloring

  corneliusroemer

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• chore: merge in from master

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Commits on Nov 8, 2021

• feat: sophisticated pango sampling

  corneliusroemer

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• fix: add download_pango_designations to localrules

  corneliusroemer

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Commits on Nov 9, 2021

• fix: add new designation files to builds.yaml for profile/basel-combined

  corneliusroemer

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• fix: add designation origin to basel-combined builds.yaml

  corneliusroemer

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• fix: bug in metadata download rule output

  corneliusroemer

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• fix: bug in metadata download rule output number 2

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• fix: bug in metadata download rule output number 3

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Commits on Nov 10, 2021

• fix: add deploy url for pango builds

  corneliusroemer

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• Merge branch 'feat/pango-build' of https://github.com/neherlab/ncov-simple into feat/pango-build

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