test ci #23
Workflow file for this run
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| name: CI | ||
| on: | ||
| pull_request: | ||
| push: | ||
| workflow_dispatch: | ||
| jobs: | ||
| tests: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout Repository | ||
| uses: actions/checkout@v2 | ||
| - name: Set up MicroMamba | ||
| uses: mamba-org/setup-micromamba@v1 | ||
| with: | ||
| environment-file: environment.yml | ||
| condarc: | | ||
| channels: | ||
| - conda-forge | ||
| - default | ||
| cache-environment: true | ||
| - name: Unit test with code coverage | ||
| shell: bash -l {0} | ||
| run: python -m pytest -vv --cov=postprocessing --cov=scripts --cov-report=xml --cov-report=term --ignore tests/integration | ||
| - name: Upload coverage reports to Codecov | ||
| uses: codecov/codecov-action@v3 | ||
| env: | ||
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | ||
| integration-tests: | ||
| runs-on: ubuntu-latest | ||
| needs: test | ||
| steps: | ||
| - name: Checkout Repository | ||
| uses: actions/checkout@v2 | ||
| - name: Set up MicroMamba | ||
| uses: mamba-org/setup-micromamba@v1 | ||
| with: | ||
| environment-file: environment.yml | ||
| condarc: | | ||
| channels: | ||
| - conda-forge | ||
| - default | ||
| cache-environment: true | ||
| - name: start docker containers | ||
| run: docker-compose -f docker-compose-integration-tests.yml up --build | ||
| - name: Run integration test | ||
| shell: bash -l {0} | ||
| run: python -m pytest tests/integration | ||
| - name: stop docker containers | ||
| run: docker-compose -f docker-compose-integration-tests.yml down | ||
| rpm: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout Repository | ||
| uses: actions/checkout@v2 | ||
| - name: Build RPM inside Docker | ||
| run: | | ||
| docker build --tag postprocess --target=package -f Dockerfile . | ||
| fname=`docker run -v $(pwd):/store postprocess ls /root/rpmbuild/RPMS/noarch` | ||
| docker run -v `pwd`:/store postprocess mv /root/rpmbuild/RPMS/noarch/$fname /store | ||
| one=${fname#*postprocessing-} | ||
| two=${one%.noarch*} | ||
| echo "::set-output name=version::$two" | ||
| echo "::set-output name=fname::$fname" | ||
| continue-on-error: false | ||
| # TODO: uncomment this once we have switched to python3 and can conda install the module build | ||
| # wheel: | ||
| # runs-on: ubuntu-latest | ||
| # steps: | ||
| # - name: Checkout Repository | ||
| # uses: actions/checkout@v2 | ||
| # | ||
| # - name: Set up MicroMamba | ||
| # uses: mamba-org/setup-micromamba@v1 | ||
| # with: | ||
| # environment-file: environment.yml | ||
| # condarc: | | ||
| # channels: | ||
| # - conda-forge | ||
| # - default | ||
| # cache-environment: true | ||
| # | ||
| # - name: Build wheel | ||
| # shell: bash -l {0} | ||
| # run: python -m build --wheel | ||
