Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

CI failing with Augur 25.3.0 #1146

Closed
victorlin opened this issue Aug 22, 2024 · 1 comment · Fixed by #1147
Closed

CI failing with Augur 25.3.0 #1146

victorlin opened this issue Aug 22, 2024 · 1 comment · Fixed by #1147
Assignees
Labels
bug Something isn't working

Comments

@victorlin
Copy link
Member

Noticed on this run from #1106:

Run cram --shell=/bin/bash tests/sanitize-metadata.t
!
--- tests/sanitize-metadata.t
+++ tests/sanitize-metadata.t.err
@@ -41,7 +41,7 @@
   >  --metadata-id-columns strain \
   >  --database-id-columns gisaid_epi_isl genbank_accession \
   >  --output "$TMP/metadata.tsv"
-  ERROR: None of the possible id columns (['strain']) were found in the metadata's columns ('Virus name', 'gender', 'date', 'gisaid_epi_isl')
+  ERROR: None of the possible id columns ('strain') were found in the metadata's columns ('Virus name', 'gender', 'date', 'gisaid_epi_isl')
   [1]

Fix is simple, I'll update the output text to match.

@victorlin victorlin added the bug Something isn't working label Aug 22, 2024
@victorlin victorlin self-assigned this Aug 22, 2024
@tsibley
Copy link
Member

tsibley commented Aug 27, 2024

Thanks!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

Successfully merging a pull request may close this issue.

2 participants