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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 269 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 296 163

Repositories

Showing 10 of 94 repositories
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 269 AGPL-3.0 128 225 (1 issue needs help) 39 Updated Jan 14, 2025
  • lassa Public

    Nextstrain build for Lassa virus

    nextstrain/lassa’s past year of commit activity
    Python 0 5 10 1 Updated Jan 14, 2025
  • rabies Public
    nextstrain/rabies’s past year of commit activity
    Python 0 0 6 0 Updated Jan 14, 2025
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 3 0 8 1 Updated Jan 13, 2025
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox’s past year of commit activity
    Python 45 MIT 19 27 5 Updated Jan 13, 2025
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 20 12 Updated Jan 13, 2025
  • forecasts-ncov Public

    SARS-CoV-2 variant growth rates and frequency forecasts

    nextstrain/forecasts-ncov’s past year of commit activity
    Python 7 2 12 7 Updated Jan 13, 2025
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 46 27 23 0 Updated Jan 13, 2025
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 296 AGPL-3.0 163 234 (4 issues need help) 34 Updated Jan 10, 2025
  • yellow-fever Public
    nextstrain/yellow-fever’s past year of commit activity
    Python 0 4 0 0 Updated Jan 9, 2025
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