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90 repositories
auspice
PublicWNV
Publicseasonal-flu
Publicnipah
Publicnextclade_data
PublicDatasets for https://github.com/nextstrain/nextcladencov
PublicNextstrain build for novel coronavirus SARS-CoV-2augur
Publicdocker-base
Publicfauna
Publicnextstrain.org
Publicinfra
Publicnextclade
Publicauspice.us
Publicbioconda-recipes
Publicoropouche
Publicconda-base
Publicmpox
PublicNextstrain build for mpox virusdocs.nextstrain.org
Publiccli
PublicThe Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.pathogen-repo-guide
Public templateforecasts-ncov
PublicSARS-CoV-2 variant growth rates and frequency forecastsavian-flu
Publicyellow-fever
Publicreadthedocs-testbed
Publicsphinx-theme
Public.github
Publicdengue
Publicncov-ingest
Public