Clincnv #11
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Clincnv #11
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nvnieuwk
reviewed
Jun 25, 2024
| @@ -0,0 +1,44 @@ | |||
| process BEDANNOTATEGC { | |||
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Suggested change
| process BEDANNOTATEGC { | |
| process CLINCNV_BEDANNOTATEGC { |
I think adding the CLINCNV_ prefix to all these modules will help in keeping it clear that these modules are part of the clincnv toolkit. Can this be added to each created process here?
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Or NVM this is part of ngs-bits. Can this be updated to the NGSBITS_ prefix instead and be moved to a correct subfolder called ngsbits? This will keep it clear from where the tool comes :)
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| cat <<-END_VERSIONS > versions.yml | ||
| "${task.process}": | ||
| BedCoverage: \$(BedCoverage --version | sed 's/BedCoverage //g') |
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| BedCoverage: \$(BedCoverage --version | sed 's/BedCoverage //g') | |
| BedAnnotateGC: \$(BedAnnotateGC --version | sed 's/BedAnnotateGC //g') |
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| // GERMLINE(ch_clincnv,BEDANNOTATEGC.out.annotatedbed) | ||
| // ch_versions = ch_versions.mix(GERMLINE.out.versions) |
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Is this intentionally commented out?
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PR checklist
nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).