nf-test ci updates

nf-cmgg · Nov 4, 2024 · ef5a811 · ef5a811
1 parent 23729f7
commit ef5a811
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -67,7 +67,7 @@ jobs:
 
       - name: Run pipeline with test data
         run: |
-          $CONDA/bin/nf-test test --tag ${{ matrix.test }} --ci --junitxml=default.xml
+          $CONDA/bin/nf-test test --tag ${{ matrix.test }} --ci --only-changed --junitxml=default.xml
 
       - name: Publish Test Report
         uses: mikepenz/action-junit-report@v3

diff --git a/tests/nextflow.config b/tests/nextflow.config
@@ -66,7 +66,8 @@ params {
     igenomes_ignore = true
     genomes_ignore = true
 
-    validationSchemaIgnoreParams     = 'genomes,igenomes_base,test_data,cram1,cram2,cram3,crai1,crai2,crai3,vcf1,vcf2,vcf3,tbi1,tbi2,tbi3,gvcf1,gvcf2,gvcf3,gtbi1,gtbi2,gtbi3,famvcf,famtbi,ped,bed,split1,split2,split3'
+    validationSchemaIgnoreParams     = 'genomes,igenomes_base,test_data,cram1,cram2,cram3,crai1,crai2,crai3,vcf1,vcf2,vcf3,tbi1,tbi2,tbi3,gvcf1,gvcf2,gvcf3,gtbi1,gtbi2,gtbi3,famvcf,famtbi,ped,bed,split1,split2,split3,modules_testdata_base_path'
+    modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
 }
 
 process {