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Release PR v1.0.0 #4

Merged
merged 40 commits into from
Sep 7, 2023
Merged

Release PR v1.0.0 #4

merged 40 commits into from
Sep 7, 2023

Commits on Jul 4, 2023

  1. bump to dev

    @nvnieuwk
    nvnieuwk committed Jul 4, 2023
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  2. fix typo in bwa parsing

    @nvnieuwk
    nvnieuwk committed Jul 4, 2023
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  3. temp view

    @nvnieuwk
    nvnieuwk committed Jul 4, 2023
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  4. fix bwa channels

    @nvnieuwk
    nvnieuwk committed Jul 4, 2023
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  5. fix trimgalore prefix

    @nvnieuwk
    nvnieuwk committed Jul 4, 2023
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  6. typo

    @nvnieuwk
    nvnieuwk committed Jul 4, 2023
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  7. remove temp view

    @nvnieuwk
    nvnieuwk committed Jul 4, 2023
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  8. undo trimgalore fix

    @nvnieuwk
    nvnieuwk committed Jul 4, 2023
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  9. possible fix?

    @nvnieuwk
    nvnieuwk committed Jul 4, 2023
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  10. fix a bug with trimgalore

    @nvnieuwk
    nvnieuwk committed Jul 4, 2023
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  11. finally fix trimgalore

    @nvnieuwk
    nvnieuwk committed Jul 4, 2023
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Commits on Jul 5, 2023

  1. fix qdnaseq container?

    @nvnieuwk
    nvnieuwk committed Jul 5, 2023
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  2. removed alignment in favor of inputting cram/bam

    @nvnieuwk
    nvnieuwk committed Jul 5, 2023
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  3. update docs

    @nvnieuwk
    nvnieuwk committed Jul 5, 2023
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  4. update modules

    @nvnieuwk
    nvnieuwk committed Jul 5, 2023
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  5. improve downloading of bsgenome

    @nvnieuwk
    nvnieuwk committed Jul 5, 2023
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  6. update docs

    @nvnieuwk
    nvnieuwk committed Jul 5, 2023
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  7. update tests

    @nvnieuwk
    nvnieuwk committed Jul 5, 2023
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Commits on Jul 6, 2023

  1. fix container

    @nvnieuwk
    nvnieuwk committed Jul 6, 2023
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  2. fix get_bsgenome

    @nvnieuwk
    nvnieuwk committed Jul 6, 2023
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Commits on Jul 7, 2023

  1. container fix?

    @nvnieuwk
    nvnieuwk committed Jul 7, 2023
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  2. container fix?

    @nvnieuwk
    nvnieuwk committed Jul 7, 2023
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  3. container fix?

    @nvnieuwk
    nvnieuwk committed Jul 7, 2023
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  4. container fix?

    @nvnieuwk
    nvnieuwk committed Jul 7, 2023
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  5. container fix?

    @nvnieuwk
    nvnieuwk committed Jul 7, 2023
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  6. container fix number 1235

    @nvnieuwk
    nvnieuwk committed Jul 7, 2023
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Commits on Jul 10, 2023

  1. try setting an env var

    @nvnieuwk
    nvnieuwk committed Jul 10, 2023
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Commits on Jul 12, 2023

  1. try setting an env var try 2

    @nvnieuwk
    nvnieuwk committed Jul 12, 2023
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Commits on Jul 24, 2023

  1. make qdnaseq more efficient

    @nvnieuwk
    nvnieuwk committed Jul 24, 2023
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  2. eclint

    @nvnieuwk
    nvnieuwk committed Jul 24, 2023
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Commits on Jul 27, 2023

  1. small fix to chunk size

    @nvnieuwk
    nvnieuwk committed Jul 27, 2023
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  2. fix file extension

    @nvnieuwk
    nvnieuwk committed Jul 27, 2023
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  3. fix output extension of process

    @nvnieuwk
    nvnieuwk committed Jul 27, 2023
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  4. fix stub

    @nvnieuwk
    nvnieuwk committed Jul 27, 2023
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Commits on Jul 28, 2023

  1. fix the case of duplicate files

    @nvnieuwk
    nvnieuwk committed Jul 28, 2023
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  2. fixed a link error

    @nvnieuwk
    nvnieuwk committed Jul 28, 2023
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  3. patch samtools merge

    @nvnieuwk
    nvnieuwk committed Jul 28, 2023
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Commits on Sep 7, 2023

  1. Merge pull request #3 from CenterForMedicalGeneticsGhent/remove-align… 

    …ment

Remove alignment
    @nvnieuwk
    nvnieuwk authored Sep 7, 2023
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  2. bump version to 1.0.0

    @nvnieuwk
    nvnieuwk committed Sep 7, 2023
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  3. update modules

    @nvnieuwk
    nvnieuwk committed Sep 7, 2023
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