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added nf-test
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Danilo Di Leo committed Jan 21, 2025
1 parent cda8d13 commit 3ab3268
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742 changes: 33 additions & 709 deletions .nf-test.log
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852 changes: 852 additions & 0 deletions .nf-test/tests/b466648aaf744b56dd5e781d3985022a/meta/nextflow.log
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1 change: 1 addition & 0 deletions .nf-test/tests/b466648aaf744b56dd5e781d3985022a/meta/params.json
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{"skip_qiime":true,"outdir":"/cfs/klemming/projects/supr/snic2020-16-76/ddl/dev/ampliseq/.nf-test/tests/b466648aaf744b56dd5e781d3985022a/output"}
1 change: 1 addition & 0 deletions .nf-test/tests/b466648aaf744b56dd5e781d3985022a/meta/std.err
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Nextflow 24.10.4 is available - Please consider updating your version to it
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52 changes: 52 additions & 0 deletions .nf-test/tests/b466648aaf744b56dd5e781d3985022a/meta/trace.csv
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task_id hash native_id name status exit submit duration realtime %cpu peak_rss peak_vmem rchar wchar
6 fe/204864 3723406 NFCORE_AMPLISEQ:AMPLISEQ:HMMER_HMMEXTRACT (bac16s) COMPLETED 0 2025-01-21 15:44:57.348 1.5s 0ms 99.9% 3.1 MB 5.4 MB 373.5 KB 268.7 KB
5 70/3aa798 3723212 NFCORE_AMPLISEQ:AMPLISEQ:HMMER_HMMEXTRACT (arc) COMPLETED 0 2025-01-21 15:44:56.378 2.6s 0ms 87.4% 3.1 MB 5.4 MB 361.6 KB 259.1 KB
4 0b/e32264 3723062 NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_2) COMPLETED 0 2025-01-21 15:44:56.189 2.8s 32ms 122.1% 2.8 MB 3.9 MB 134.8 KB 917 B
2 bd/68bf22 3723050 NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1) COMPLETED 0 2025-01-21 15:44:56.159 2.9s 26ms 110.6% 2.9 MB 3.9 MB 134.8 KB 917 B
7 2a/7fe29f 3723486 NFCORE_AMPLISEQ:AMPLISEQ:HMMER_HMMEXTRACT (euk18s) COMPLETED 0 2025-01-21 15:44:57.636 1.4s 0ms 114.0% 3.2 MB 5.4 MB 429.5 KB 323.7 KB
8 35/b5b4a4 3723490 NFCORE_AMPLISEQ:AMPLISEQ:HMMER_HMMEXTRACT (euk28s) COMPLETED 0 2025-01-21 15:44:57.646 1.4s 0ms 116.1% 5.5 MB 9.8 MB 1 MB 648.3 KB
1 90/a4127e 3723057 NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_1a) COMPLETED 0 2025-01-21 15:44:56.178 3s 24ms 142.0% 2.8 MB 3.9 MB 134.9 KB 917 B
3 b7/6293c2 3723070 NFCORE_AMPLISEQ:AMPLISEQ:RENAME_RAW_DATA_FILES (sampleID_2a) COMPLETED 0 2025-01-21 15:44:56.199 3s 24ms 106.7% 2.9 MB 3.9 MB 134.9 KB 917 B
11 4c/f47f15 3727072 NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1a) COMPLETED 0 2025-01-21 15:44:59.198 3.2s 2s 109.3% 20.6 MB 27.9 MB 13.4 MB 5.5 MB
12 c8/667f6b 3727079 NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_2a) COMPLETED 0 2025-01-21 15:44:59.207 3.2s 2s 108.5% 20.8 MB 27.9 MB 13.4 MB 5.5 MB
9 c6/206aa4 3727001 NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_2) COMPLETED 0 2025-01-21 15:44:59.071 3.5s 2s 107.5% 19.5 MB 26.8 MB 13.6 MB 5.6 MB
10 08/3382ba 3727015 NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_BASIC (sampleID_1) COMPLETED 0 2025-01-21 15:44:59.101 3.5s 2s 106.0% 17.3 MB 24.8 MB 12.5 MB 4.5 MB
13 58/d6a089 3729419 NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_STD (cutadapt_standard) COMPLETED 0 2025-01-21 15:45:02.627 5.5s 0ms 63.2% 10.5 MB 32.8 MB 883.1 KB 660 B
16 57/f5bd5a 3731430 NFCORE_AMPLISEQ:AMPLISEQ:CUTADAPT_WORKFLOW:CUTADAPT_SUMMARY_MERGE (cutadapt_standard_summary.tsv) COMPLETED 0 2025-01-21 15:45:08.149 5.1s 0ms 92.0% 0 0 98.4 KB 462 B
15 53/0cf296 3729431 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (FW) COMPLETED 0 2025-01-21 15:45:02.671 30.8s 24s 162.4% 1.4 GB 70.5 GB 46.9 MB 2.7 MB
14 0f/407881 3729435 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY1 (RV) COMPLETED 0 2025-01-21 15:45:02.680 31.3s 24s 162.9% 1.4 GB 70.6 GB 47 MB 2.7 MB
18 0d/6e66e7 3736342 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (RV) COMPLETED 0 2025-01-21 15:45:34.006 5.7s 3s 700.8% 55 MB 52.3 GB 21.3 MB 438 B
17 3d/77a814 3736294 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:TRUNCLEN (FW) COMPLETED 0 2025-01-21 15:45:33.730 7s 3s 704.2% 58.9 MB 52.3 GB 21.3 MB 438 B
22 91/77b07a 3738048 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM (sampleID_1) COMPLETED 0 2025-01-21 15:45:40.991 19.5s 11s 175.0% 756.8 MB 53.4 GB 41.1 MB 324.3 KB
20 60/44de44 3738029 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM (sampleID_2a) COMPLETED 0 2025-01-21 15:45:40.965 19.6s 11s 175.9% 754.8 MB 53.4 GB 41.1 MB 408.2 KB
21 47/05ca57 3738041 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM (sampleID_2) COMPLETED 0 2025-01-21 15:45:40.979 21.1s 13s 165.3% 715.5 MB 53.3 GB 41.2 MB 430.9 KB
19 4c/828f96 3738022 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM (sampleID_1a) COMPLETED 0 2025-01-21 15:45:40.944 22.1s 14s 167.6% 618.5 MB 53.2 GB 41.1 MB 415.9 KB
23 e0/2ece52 3744962 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2 (RV) COMPLETED 0 2025-01-21 15:46:03.198 27.5s 21s 165.4% 1.5 GB 70.5 GB 45.6 MB 2.4 MB
24 67/9fc0c0 3744948 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_QUALITY2 (FW) COMPLETED 0 2025-01-21 15:46:03.188 27.7s 21s 169.9% 1.4 GB 70.5 GB 45.5 MB 2.4 MB
25 ff/b4f4be 3744969 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_ERR (1) COMPLETED 0 2025-01-21 15:46:03.206 29.3s 23s 197.7% 1 GB 55.9 GB 42.5 MB 1.2 MB
26 2b/e5967d 3751633 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_DENOISING (1) COMPLETED 0 2025-01-21 15:46:32.572 19.8s 15s 219.1% 742.1 MB 54.2 GB 43.3 MB 867.4 KB
27 a9/8e6aa1 3757435 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_RMCHIMERA (1) COMPLETED 0 2025-01-21 15:46:52.412 15.6s 9s 252.2% 720.1 MB 53.3 GB 40.1 MB 19.7 KB
28 95/749e61 3764208 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_STATS (1) COMPLETED 0 2025-01-21 15:47:08.185 15.7s 10s 245.5% 606.8 MB 53.2 GB 40.9 MB 1.1 KB
29 3d/d15da0 3767434 NFCORE_AMPLISEQ:AMPLISEQ:DADA2_MERGE COMPLETED 0 2025-01-21 15:47:24.061 13.9s 9s 284.7% 538.4 MB 52.3 GB 35.8 MB 232 KB
30 c9/2315a1 3770961 NFCORE_AMPLISEQ:AMPLISEQ:MERGE_STATS_STD (1) COMPLETED 0 2025-01-21 15:47:38.003 5.4s 1s 3918.2% 3.3 MB 4.4 MB 6 MB 1.3 KB
31 44/cf582b 3770958 NFCORE_AMPLISEQ:AMPLISEQ:BARRNAP (ASV_seqs.fasta) COMPLETED 0 2025-01-21 15:47:37.995 14.1s 12s 100.2% 37.2 MB 756.8 MB 8.1 MB 3.5 MB
32 8d/4e5544 3774650 NFCORE_AMPLISEQ:AMPLISEQ:BARRNAPSUMMARY COMPLETED 0 2025-01-21 15:47:52.178 9.6s 0ms 104.1% 10.7 MB 33.1 MB 564.1 KB 23.1 KB
33 9c/4bd755 3776330 NFCORE_AMPLISEQ:AMPLISEQ:FILTER_SSU (ASV_seqs.fasta) COMPLETED 0 2025-01-21 15:48:01.870 8.3s 3s 460.2% 343 MB 40.4 GB 15.9 MB 89.6 KB
35 c8/c3ddf0 3778705 NFCORE_AMPLISEQ:AMPLISEQ:FASTA_HMMSEARCH_RANK_FASTAS:HMMER_HMMSEARCH (mito16s) COMPLETED 0 2025-01-21 15:48:10.352 2.5s 0ms 109.8% 16 MB 1.9 GB 495.5 KB 7.1 KB
39 3d/ae5f89 3778533 NFCORE_AMPLISEQ:AMPLISEQ:FASTA_HMMSEARCH_RANK_FASTAS:HMMER_HMMSEARCH (euk28s) COMPLETED 0 2025-01-21 15:48:10.229 2.7s 0ms 84.6% 5.8 MB 8.5 MB 859.3 KB 7.1 KB
37 0b/40ff0a 3778537 NFCORE_AMPLISEQ:AMPLISEQ:FASTA_HMMSEARCH_RANK_FASTAS:HMMER_HMMSEARCH (arc) COMPLETED 0 2025-01-21 15:48:10.239 4.7s 2s 98.0% 25.4 MB 1.9 GB 2.1 MB 958.9 KB
36 d6/f17d34 3778559 NFCORE_AMPLISEQ:AMPLISEQ:FASTA_HMMSEARCH_RANK_FASTAS:HMMER_HMMSEARCH (bac16s) COMPLETED 0 2025-01-21 15:48:10.257 4.8s 2s 100.0% 25.9 MB 1.9 GB 1.3 MB 955.6 KB
38 6c/cda160 3778549 NFCORE_AMPLISEQ:AMPLISEQ:FASTA_HMMSEARCH_RANK_FASTAS:HMMER_HMMSEARCH (euk18s) COMPLETED 0 2025-01-21 15:48:10.248 5.2s 3s 99.5% 27.9 MB 1.9 GB 1.1 MB 697.5 KB
34 b5/ae3ca8 3778523 NFCORE_AMPLISEQ:AMPLISEQ:MERGE_STATS_FILTERSSU (1) COMPLETED 0 2025-01-21 15:48:10.214 6s 1s 2918.6% 3 MB 4.4 MB 6 MB 1.4 KB
40 1e/42eb11 3778887 NFCORE_AMPLISEQ:AMPLISEQ:SUMMARY_REPORT (1) COMPLETED 0 2025-01-21 15:48:10.657 11.3s 6.3s 329.6% 340.4 MB 1.1 TB 31.1 MB 7.9 MB
41 83/42bd46 3783207 NFCORE_AMPLISEQ:AMPLISEQ:FASTA_HMMSEARCH_RANK_FASTAS:HMMER_HMMRANK (rank) COMPLETED 0 2025-01-21 15:48:15.698 6.4s 2.2s 789.5% 143.7 MB 89.8 GB 14.4 MB 148.6 KB
42 c4/d6a1b8 3785285 NFCORE_AMPLISEQ:AMPLISEQ:FASTA_HMMSEARCH_RANK_FASTAS:SEQTK_SUBSEQ (ASV_seqs.ssu.fasta) COMPLETED 0 2025-01-21 15:48:22.520 1.2s 0ms 113.6% 3.2 MB 5.4 MB 263.9 KB 100.6 KB
43 ed/6c14b7 3785840 NFCORE_AMPLISEQ:AMPLISEQ:FASTA_NEWICK_EPANG_GAPPA:CLUSTALO_ALIGN (bac16s) COMPLETED 0 2025-01-21 15:48:23.802 29.2s 28s 219.0% 54.5 MB 2.1 GB 1.1 MB 1.6 MB
44 ea/2d0b7f 3789898 NFCORE_AMPLISEQ:AMPLISEQ:FASTA_NEWICK_EPANG_GAPPA:EPANG_SPLIT_CLUSTALO (bac16s) COMPLETED 0 2025-01-21 15:48:53.334 1.7s 0ms 103.8% 3.2 MB 5.4 MB 4 MB 1.6 MB
45 c3/2c8b56 3790916 NFCORE_AMPLISEQ:AMPLISEQ:FASTA_NEWICK_EPANG_GAPPA:EPANG_PLACE (bac16s) COMPLETED 0 2025-01-21 15:48:55.091 1.9s 0ms 483.8% 12 MB 75.7 MB 992.1 KB 267.1 KB
47 6b/2a864a 3791574 NFCORE_AMPLISEQ:AMPLISEQ:FASTA_NEWICK_EPANG_GAPPA:GAPPA_GRAFT (bac16s) COMPLETED 0 2025-01-21 15:48:57.066 1.4s 0ms 108.4% 5.2 MB 15.6 MB 170.2 KB 39.8 KB
48 21/d61308 3791630 NFCORE_AMPLISEQ:AMPLISEQ:FASTA_NEWICK_EPANG_GAPPA:GAPPA_ASSIGN (bac16s) COMPLETED 0 2025-01-21 15:48:57.130 1.4s 0ms 154.4% 8.8 MB 15.9 MB 256.6 KB 859.4 KB
46 88/cd36d6 3791563 NFCORE_AMPLISEQ:AMPLISEQ:FASTA_NEWICK_EPANG_GAPPA:GAPPA_HEATTREE (bac16s) COMPLETED 0 2025-01-21 15:48:57.054 1.5s 0ms 109.7% 5.4 MB 15.6 MB 177.6 KB 1.6 MB
49 04/d1061a 3793195 NFCORE_AMPLISEQ:AMPLISEQ:FORMAT_PPLACETAX (bac16s.taxonomy.per_query) COMPLETED 0 2025-01-21 15:48:58.633 5.8s 1s 2059.4% 3.3 MB 4.4 MB 6.5 MB 92.3 KB
51 2b/472e45 3795425 NFCORE_AMPLISEQ:AMPLISEQ:PHYLOSEQ_INTAX_PPLACE (1) COMPLETED 0 2025-01-21 15:49:04.454 5.5s 2s 704.9% 50.5 MB 52.3 GB 21.5 MB 35.3 KB
50 f8/db336f 3793226 NFCORE_AMPLISEQ:AMPLISEQ:MULTIQC COMPLETED 0 2025-01-21 15:48:58.706 16.6s 11s 351.4% 638.4 MB 71.5 GB 76.7 MB 19.8 MB
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